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Bioc-devel October 2011

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[Bioc-devel] BioC 2.9 branch created
1 msg
Dan Tenenbaum BioC 2.9 branch created Oct 31, 2011
[Bioc-devel] Lock down of SVN bioconductor/trunk today at 3PM PDT to prepare for BioC 2.9 release
1 msg
Dan Tenenbaum Lock down of SVN bioconductor/trunk today at 3PM PDT to prepare for BioC 2.9 release Oct 31, 2011
[Bioc-devel] Slicing Throws Interger Overflow
3 msgs
Dario Strbenac Slicing Throws Interger Overflow Oct 26, 2011
Valerie Obenchain Slicing Throws Interger Overflow Oct 29, 2011
Valerie Obenchain Slicing Throws Interger Overflow Oct 31, 2011
[Bioc-devel] using and importing CRAN package functions from "plyr"
2 msgs
Andreas Heider using and importing CRAN package functions from "plyr" Oct 27, 2011
Martin Morgan using and importing CRAN package functions from "plyr" Oct 28, 2011
[Bioc-devel] Modification of seqnames in GRanges
4 msgs
Liu,Bin Modification of seqnames in GRanges Oct 28, 2011
Cook, Malcolm Modification of seqnames in GRanges Oct 28, 2011
Liu,Bin Modification of seqnames in GRanges Oct 28, 2011
Valerie Obenchain Modification of seqnames in GRanges Oct 28, 2011
[Bioc-devel] Exposing some more IRanges mojo to C.
1 msg
Steve Lianoglou Exposing some more IRanges mojo to C. Oct 27, 2011
[Bioc-devel] JVM version on pitt
1 msg
Dan Tenenbaum JVM version on pitt Oct 27, 2011
[Bioc-devel] JVM version on pitt
1 msg
Cabanski, Chris JVM version on pitt Oct 27, 2011
[Bioc-devel] purpose of "R CMD check --no-rebuild-vignettes"
2 msgs
Andreas Heider purpose of "R CMD check --no-rebuild-vignettes" Oct 27, 2011
Douglas Bates purpose of "R CMD check --no-rebuild-vignettes" Oct 27, 2011
[Bioc-devel] Development version of baySeq failing check on Windows machines
2 msgs
Thomas J Hardcastle Development version of baySeq failing check on Windows machines Oct 25, 2011
Martin Morgan Development version of baySeq failing check on Windows machines Oct 25, 2011
[Bioc-devel] affyILM build error on Windows computers
3 msgs
Fabrice Berger affyILM build error on Windows computers Oct 25, 2011
Henrik Bengtsson affyILM build error on Windows computers Oct 25, 2011
Martin Morgan affyILM build error on Windows computers Oct 25, 2011
[Bioc-devel] C function is wrong under Windows 7.
7 msgs
Evarist Planet C function is wrong under Windows 7. Oct 24, 2011
Vincent Carey C function is wrong under Windows 7. Oct 24, 2011
Evarist Planet C function is wrong under Windows 7. Oct 24, 2011
Steve Lianoglou C function is wrong under Windows 7. Oct 24, 2011
Evarist Planet C function is wrong under Windows 7. Oct 24, 2011
Steve Lianoglou C function is wrong under Windows 7. Oct 24, 2011
Evarist Planet C function is wrong under Windows 7. Oct 24, 2011
[Bioc-devel] Preparing package release notes
6 msgs
Martin Morgan Preparing package release notes Oct 21, 2011
Martin Morgan Preparing package release notes Oct 21, 2011
Robert Castelo Preparing package release notes Oct 22, 2011
Martin Morgan Preparing package release notes Oct 22, 2011
Robert Castelo Preparing package release notes Oct 22, 2011
Martin Morgan Preparing package release notes Oct 22, 2011
[Bioc-devel] Why can't I install parallel?
2 msgs
Rory Stark Why can't I install parallel? Oct 22, 2011
Martin Morgan Why can't I install parallel? Oct 22, 2011
[Bioc-devel] Warning message concerning encoding on pitt server
1 msg
Dan Tenenbaum Warning message concerning encoding on pitt server Oct 21, 2011
[Bioc-devel] gdsfmt not installed on Windows x64
3 msgs
Dan Tenenbaum gdsfmt not installed on Windows x64 Oct 20, 2011
Stephanie M. Gogarten gdsfmt not installed on Windows x64 Oct 20, 2011
Dan Tenenbaum gdsfmt not installed on Windows x64 Oct 20, 2011
[Bioc-devel] gdsfmt not installed on Windows x64
1 msg
Stephanie M. Gogarten gdsfmt not installed on Windows x64 Oct 20, 2011
[Bioc-devel] Reproducing erros on build and check
5 msgs
Stefan McKinnon Høj-Edwards Reproducing erros on build and check Oct 17, 2011
Benilton Carvalho Reproducing erros on build and check Oct 18, 2011
Stefan McKinnon Høj-Edwards Reproducing erros on build and check Oct 18, 2011
Martin Morgan Reproducing erros on build and check Oct 18, 2011
Dan Tenenbaum Reproducing erros on build and check Oct 18, 2011
[Bioc-devel] Deadline for data packages
2 msgs
Dan Tenenbaum Deadline for data packages Oct 17, 2011
Valerie Obenchain Deadline for data packages Oct 17, 2011
[Bioc-devel] Warning message concerning encoding on pitt server
2 msgs
Andreas Mitterecker Warning message concerning encoding on pitt server Oct 17, 2011
Vincent Carey Warning message concerning encoding on pitt server Oct 17, 2011
[Bioc-devel] Deadline for data packages
1 msg
Mark Dunning Deadline for data packages Oct 17, 2011
[Bioc-devel] Important deadlines next Monday October 17
1 msg
Dan Tenenbaum Important deadlines next Monday October 17 Oct 14, 2011
[Bioc-devel] biocLite Install Path
1 msg
Dan Tenenbaum biocLite Install Path Oct 13, 2011
[Bioc-devel] biocLite Install Path
1 msg
Dario Strbenac biocLite Install Path Oct 13, 2011
[Bioc-devel] Problem with generic methods name conflicts
4 msgs
Stephanie M. Gogarten Problem with generic methods name conflicts Oct 13, 2011
Martin Morgan Problem with generic methods name conflicts Oct 13, 2011
Stephanie M. Gogarten Problem with generic methods name conflicts Oct 13, 2011
Martin Morgan Problem with generic methods name conflicts Oct 13, 2011
[Bioc-devel] Problem with generic methods name conflicts
12 msgs
Herb Holyst Problem with generic methods name conflicts Oct 13, 2011
Kasper Daniel Hansen Problem with generic methods name conflicts Oct 13, 2011
Vincent Carey Problem with generic methods name conflicts Oct 13, 2011
Simon Anders Problem with generic methods name conflicts Oct 13, 2011
Vincent Carey Problem with generic methods name conflicts Oct 13, 2011
Simon Anders Problem with generic methods name conflicts Oct 13, 2011
Martin Morgan Problem with generic methods name conflicts Oct 13, 2011
Vincent Carey Problem with generic methods name conflicts Oct 13, 2011
Martin Morgan Problem with generic methods name conflicts Oct 13, 2011
Tim Triche, Jr. Problem with generic methods name conflicts Oct 13, 2011
Hervé Pagès Problem with generic methods name conflicts Oct 13, 2011
Tim Triche, Jr. Problem with generic methods name conflicts Oct 13, 2011
[Bioc-devel] older packages - clippda
4 msgs
Stephen Nyangoma older packages - clippda Oct 13, 2011
Dan Tenenbaum older packages - clippda Oct 13, 2011
Martin Morgan older packages - clippda Oct 13, 2011
Martin Morgan older packages - clippda Oct 13, 2011
[Bioc-devel] GenomicFeatures makeTranscriptDbFromUCSC Table Missing
3 msgs
Hervé Pagès GenomicFeatures makeTranscriptDbFromUCSC Table Missing Oct 7, 2011
Valerie Obenchain GenomicFeatures makeTranscriptDbFromUCSC Table Missing Oct 11, 2011
Hervé Pagès GenomicFeatures makeTranscriptDbFromUCSC Table Missing Oct 12, 2011
[Bioc-devel] SRAdb missing runs
4 msgs
Jack Zhu SRAdb missing runs Oct 4, 2011
Cook, Malcolm SRAdb missing runs Oct 7, 2011
Sean Davis SRAdb missing runs Oct 8, 2011
Cook, Malcolm SRAdb missing runs Oct 11, 2011
[Bioc-devel] graph package conflict with rtracklayer
1 msg
Cook, Malcolm graph package conflict with rtracklayer Oct 11, 2011
[Bioc-devel] c, RangesMatching function implemented so as to allow multicore vectorizing of findOverlaps
3 msgs
Cook, Malcolm c, RangesMatching function implemented so as to allow multicore vectorizing of findOverlaps Oct 10, 2011
Michael Lawrence c, RangesMatching function implemented so as to allow multicore vectorizing of findOverlaps Oct 10, 2011
Cook, Malcolm c, RangesMatching function implemented so as to allow multicore vectorizing of findOverlaps Oct 11, 2011
[Bioc-devel] graph package conflict with rtracklayer
5 msgs
Cook, Malcolm graph package conflict with rtracklayer Oct 6, 2011
Martin Morgan bug tracker (was: graph package conflict with rtracklayer) Oct 7, 2011
Cook, Malcolm bug tracker (was: graph package conflict with rtracklayer) Oct 7, 2011
Tim Triche, Jr. bug tracker (was: graph package conflict with rtracklayer) Oct 7, 2011
Michael Lawrence bug tracker (was: graph package conflict with rtracklayer) Oct 7, 2011
[Bioc-devel] graph package conflict with rtracklayer
1 msg
Martin Morgan graph package conflict with rtracklayer Oct 7, 2011
[Bioc-devel] Packages for deprecation
1 msg
Martin Morgan Packages for deprecation Oct 6, 2011
[Bioc-devel] R-2.14 alpha (was Re: Bioc 2.9 New Package submissions. The October deadlines are fast approaching.)
1 msg
Dan Tenenbaum R-2.14 alpha (was Re: Bioc 2.9 New Package submissions. The October deadlines are fast approaching.) Oct 5, 2011
[Bioc-devel] GRanges Intersect
1 msg
Dario Strbenac GRanges Intersect Oct 4, 2011
[Bioc-devel] GRanges Intersect
1 msg
Hervé Pagès GRanges Intersect Oct 4, 2011
[Bioc-devel] make check timing
2 msgs
Dan Tenenbaum make check timing Oct 4, 2011
Hervé Pagès make check timing Oct 4, 2011
[Bioc-devel] mget and AnnDbBimap problem
5 msgs
Paul Shannon mget and AnnDbBimap problem Oct 4, 2011
Steve Lianoglou mget and AnnDbBimap problem Oct 4, 2011
Benilton Carvalho mget and AnnDbBimap problem Oct 4, 2011
Paul Shannon mget and AnnDbBimap problem Oct 4, 2011
Martin Morgan mget and AnnDbBimap problem Oct 4, 2011
[Bioc-devel] Bioc 2.9 New Package submissions. The October deadlines are fast approaching.
2 msgs
Marc Carlson Bioc 2.9 New Package submissions. The October deadlines are fast approaching. Oct 3, 2011
Tim Triche, Jr. Bioc 2.9 New Package submissions. The October deadlines are fast approaching. Oct 4, 2011
[Bioc-devel] Bioc 2.9 New Package submissions. The October deadlines are fast approaching.
3 msgs
Stefan McKinnon Høj-Edwards Bioc 2.9 New Package submissions. The October deadlines are fast approaching. Oct 4, 2011
Vincent Carey Bioc 2.9 New Package submissions. The October deadlines are fast approaching. Oct 4, 2011
Sean Davis Bioc 2.9 New Package submissions. The October deadlines are fast approaching. Oct 4, 2011
[Bioc-devel] make check timing
1 msg
Kasper Daniel Hansen make check timing Oct 3, 2011