Bioc-devel September 2012

[Bioc-devel] supported platforms

1 msg Sep 28

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Dan Tenenbaum supported platforms Sep 28, 2012

[Bioc-devel] supported platforms

1 msg Sep 28

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Thomas Sandmann supported platforms Sep 28, 2012

[Bioc-devel] To use knitr, how to write the right Makefile for bioconductor devel and released branch?

8 msgs Sep 27

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Dan Tenenbaum To use knitr, how to write the right Makefile for bioconductor devel and released branch? Sep 27, 2012

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Tengfei Yin To use knitr, how to write the right Makefile for bioconductor devel and released branch? Sep 27, 2012

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Hervé Pagès To use knitr, how to write the right Makefile for bioconductor devel and released branch? Sep 27, 2012

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Martin Morgan To use knitr, how to write the right Makefile for bioconductor devel and released branch? Sep 27, 2012

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Tengfei Yin To use knitr, how to write the right Makefile for bioconductor devel and released branch? Sep 27, 2012

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Martin Morgan To use knitr, how to write the right Makefile for bioconductor devel and released branch? Sep 27, 2012

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Hervé Pagès To use knitr, how to write the right Makefile for bioconductor devel and released branch? Sep 27, 2012

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Tengfei Yin To use knitr, how to write the right Makefile for bioconductor devel and released branch? Sep 27, 2012

[Bioc-devel] To use knitr, how to write the right Makefile for bioconductor devel and released branch?

1 msg Sep 26

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Tengfei Yin To use knitr, how to write the right Makefile for bioconductor devel and released branch? Sep 26, 2012

[Bioc-devel] Debugging when test case passes in interactive session but fails R CMD check

2 msgs Sep 26

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Dan Tenenbaum Debugging when test case passes in interactive session but fails R CMD check Sep 26, 2012

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Cory Barr Debugging when test case passes in interactive session but fails R CMD check Sep 26, 2012

[Bioc-devel] Debugging when test case passes in interactive session but fails R CMD check

1 msg Sep 26

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Cory Barr Debugging when test case passes in interactive session but fails R CMD check Sep 26, 2012

[Bioc-devel] Preparing package release notes

1 msg Sep 26

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Dan Tenenbaum Preparing package release notes Sep 26, 2012

[Bioc-devel] mclapply and Vector objects

9 msgs Sep 26

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Hahne, Florian mclapply and Vector objects Sep 24, 2012

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Michael Lawrence mclapply and Vector objects Sep 24, 2012

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Michael Lawrence mclapply and Vector objects Sep 24, 2012

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Vincent Carey mclapply and Vector objects Sep 24, 2012

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Michael Lawrence mclapply and Vector objects Sep 24, 2012

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Tim Triche, Jr. mclapply and Vector objects Sep 24, 2012

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Hahne, Florian mclapply and Vector objects Sep 25, 2012

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Cook, Malcolm mclapply and Vector objects Sep 25, 2012

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Michael Lawrence mclapply and Vector objects Sep 26, 2012

[Bioc-devel] `as.list` and import `image` warnings

1 msg Sep 25

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Levi Waldron `as.list` and import `image` warnings Sep 25, 2012

[Bioc-devel] `as.list` and import `image` warnings

3 msgs Sep 25

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Levi Waldron `as.list` and import `image` warnings Sep 25, 2012

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Diego Diez `as.list` and import `image` warnings Sep 25, 2012

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Martin Morgan `as.list` and import `image` warnings Sep 25, 2012

[Bioc-devel] applying over GRanges and other vectors of ranges

7 msgs Sep 24

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Michael Lawrence applying over GRanges and other vectors of ranges Sep 24, 2012

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Tim Triche, Jr. applying over GRanges and other vectors of ranges Sep 24, 2012

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Cook, Malcolm applying over GRanges and other vectors of ranges Sep 24, 2012

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Martin Morgan applying over GRanges and other vectors of ranges Sep 24, 2012

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Michael Lawrence applying over GRanges and other vectors of ranges Sep 24, 2012

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Tim Triche, Jr. applying over GRanges and other vectors of ranges Sep 24, 2012

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Tim Triche, Jr. applying over GRanges and other vectors of ranges Sep 24, 2012

[Bioc-devel] warning in package staRank

2 msgs Sep 24

S

Siebourg Juliane warning in package staRank Sep 24, 2012

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Benilton Carvalho warning in package staRank Sep 24, 2012

[Bioc-devel] annotation() to BiocGenerics?

13 msgs Sep 24

V

Valerie Obenchain annotation() to BiocGenerics? Sep 18, 2012

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Robert Castelo annotation() to BiocGenerics? Sep 21, 2012

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Benilton Carvalho annotation() to BiocGenerics? Sep 21, 2012

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Nicolas Delhomme annotation() to BiocGenerics? Sep 21, 2012

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Martin Morgan annotation() to BiocGenerics? Sep 21, 2012

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Martin Morgan annotation() to BiocGenerics? Sep 21, 2012

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Robert Castelo annotation() to BiocGenerics? Sep 21, 2012

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Vincent Carey annotation() to BiocGenerics? Sep 21, 2012

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Robert Castelo annotation() to BiocGenerics? Sep 21, 2012

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Martin Morgan annotation() to BiocGenerics? Sep 21, 2012

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Nicolas Delhomme annotation() to BiocGenerics? Sep 21, 2012

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Adrian Alexa annotation() to BiocGenerics? Sep 23, 2012

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Robert Castelo annotation() to BiocGenerics? Sep 24, 2012

[Bioc-devel] Deadline to remove warnings is approaching

6 msgs Sep 22

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Dan Tenenbaum Deadline to remove warnings is approaching Sep 21, 2012

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Tim Triche, Jr. Deadline to remove warnings is approaching Sep 21, 2012

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Dan Tenenbaum Deadline to remove warnings is approaching Sep 21, 2012

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Vincent Carey Deadline to remove warnings is approaching Sep 22, 2012

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Martin Morgan Deadline to remove warnings is approaching Sep 22, 2012

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Tim Triche, Jr. Deadline to remove warnings is approaching Sep 22, 2012

[Bioc-devel] Euro Bioc Devel 2012 Zurich CH -- Dec 13-14 2012 -- registration open

1 msg Sep 22

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Mark Robinson Euro Bioc Devel 2012 Zurich CH -- Dec 13-14 2012 -- registration open Sep 22, 2012

[Bioc-devel] SummarizedExperiment: potential for data integration and meta-analysis?

7 msgs Sep 21

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Michael Lawrence SummarizedExperiment: potential for data integration and meta-analysis? Sep 20, 2012

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Vincent Carey SummarizedExperiment: potential for data integration and meta-analysis? Sep 20, 2012

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Michael Lawrence SummarizedExperiment: potential for data integration and meta-analysis? Sep 20, 2012

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Martin Morgan SummarizedExperiment: potential for data integration and meta-analysis? Sep 21, 2012

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Kasper Daniel Hansen SummarizedExperiment: potential for data integration and meta-analysis? Sep 21, 2012

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Michael Lawrence SummarizedExperiment: potential for data integration and meta-analysis? Sep 21, 2012

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Tim Triche, Jr. SummarizedExperiment: potential for data integration and meta-analysis? Sep 21, 2012

[Bioc-devel] SummarizedExperiments

17 msgs Sep 19

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Martin Morgan SummarizedExperiments Sep 2, 2012

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Tim Triche, Jr. SummarizedExperiments Sep 4, 2012

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Martin Morgan SummarizedExperiments Sep 4, 2012

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Tim Triche, Jr. SummarizedExperiments Sep 5, 2012

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Kasper Daniel Hansen SummarizedExperiments Sep 6, 2012

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Tim Triche, Jr. SummarizedExperiments Sep 6, 2012

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Kasper Daniel Hansen SummarizedExperiments Sep 6, 2012

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Tim Triche, Jr. SummarizedExperiments Sep 6, 2012

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Martin Morgan SummarizedExperiments Sep 6, 2012

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Martin Morgan SummarizedExperiments Sep 12, 2012

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Kasper Daniel Hansen SummarizedExperiments Sep 12, 2012

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Martin Morgan SummarizedExperiments Sep 12, 2012

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Kasper Daniel Hansen SummarizedExperiments Sep 14, 2012

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Tim Triche, Jr. SummarizedExperiments Sep 14, 2012

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Kasper Daniel Hansen SummarizedExperiments Sep 14, 2012

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Martin Morgan SummarizedExperiments Sep 14, 2012

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Kasper Daniel Hansen SummarizedExperiments Sep 19, 2012

[Bioc-devel] showMethods

2 msgs Sep 18

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Kasper Daniel Hansen showMethods Sep 18, 2012

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Martin Morgan showMethods Sep 18, 2012

[Bioc-devel] _R_CHECK_FORCE_SUGGESTS_ = false

8 msgs Sep 16

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Yue Li _R_CHECK_FORCE_SUGGESTS_ = false Sep 15, 2012

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Paul Shannon _R_CHECK_FORCE_SUGGESTS_ = false Sep 15, 2012

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Henrik Bengtsson _R_CHECK_FORCE_SUGGESTS_ = false Sep 15, 2012

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Henrik Bengtsson _R_CHECK_FORCE_SUGGESTS_ = false Sep 15, 2012

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Yue Li _R_CHECK_FORCE_SUGGESTS_ = false Sep 15, 2012

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Yue Li _R_CHECK_FORCE_SUGGESTS_ = false Sep 15, 2012

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Martin Morgan _R_CHECK_FORCE_SUGGESTS_ = false Sep 15, 2012

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Vincent Carey _R_CHECK_FORCE_SUGGESTS_ = false Sep 16, 2012

[Bioc-devel] Biostrings kmer Positional Frequencies

2 msgs Sep 13

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Dario Strbenac Biostrings kmer Positional Frequencies Sep 12, 2012

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Valerie Obenchain Biostrings kmer Positional Frequencies Sep 13, 2012

[Bioc-devel] error in moscato1 BUILD

1 msg Sep 13

D

Dan Tenenbaum error in moscato1 BUILD Sep 13, 2012

[Bioc-devel] error in moscato1 BUILD

1 msg Sep 13

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Ou, Jianhong error in moscato1 BUILD Sep 13, 2012

[Bioc-devel] loading VariantAnnotation package breaks ggplot2::qplot when faceting, potential cbind problem?

7 msgs Sep 12

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Tengfei Yin loading VariantAnnotation package breaks ggplot2::qplot when faceting, potential cbind problem? Sep 12, 2012

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Martin Morgan loading VariantAnnotation package breaks ggplot2::qplot when faceting, potential cbind problem? Sep 12, 2012

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Martin Morgan loading VariantAnnotation package breaks ggplot2::qplot when faceting, potential cbind problem? Sep 12, 2012

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Tengfei Yin loading VariantAnnotation package breaks ggplot2::qplot when faceting, potential cbind problem? Sep 12, 2012

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Martin Morgan loading VariantAnnotation package breaks ggplot2::qplot when faceting, potential cbind problem? Sep 12, 2012

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Tengfei Yin loading VariantAnnotation package breaks ggplot2::qplot when faceting, potential cbind problem? Sep 12, 2012

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Tengfei Yin loading VariantAnnotation package breaks ggplot2::qplot when faceting, potential cbind problem? Sep 12, 2012

[Bioc-devel] Re-encoding failures on OS X (that always puzzled me)

1 msg Sep 12

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Henrik Bengtsson Re-encoding failures on OS X (that always puzzled me) Sep 12, 2012

[Bioc-devel] Re-encoding failures on OS X (that always puzzled me)

2 msgs Sep 12

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Henrik Bengtsson Re-encoding failures on OS X (that always puzzled me) Sep 7, 2012

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Henrik Bengtsson Re-encoding failures on OS X (that always puzzled me) Sep 12, 2012

[Bioc-devel] Course Announcement: Advanced R / Bioconductor Programming, Oct. 15-16, Seattle, WA

1 msg Sep 12

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Martin Morgan Course Announcement: Advanced R / Bioconductor Programming, Oct. 15-16, Seattle, WA Sep 12, 2012

[Bioc-devel] counting RNA-seq reads in R/BioC

3 msgs Sep 11

M

Mark Robinson counting RNA-seq reads in R/BioC Sep 11, 2012

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Nicolas Delhomme counting RNA-seq reads in R/BioC Sep 11, 2012

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Valerie Obenchain counting RNA-seq reads in R/BioC Sep 11, 2012

[Bioc-devel] Deadline approaching for packages to build/check without error

1 msg Sep 7

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Dan Tenenbaum Deadline approaching for packages to build/check without error Sep 7, 2012

[Bioc-devel] Courtesy message for prospective package contributers.

1 msg Sep 7

M

Marc Carlson Courtesy message for prospective package contributers. Sep 7, 2012

[Bioc-devel] distanceToNearest Self Query

4 msgs Sep 5

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Dario Strbenac distanceToNearest Self Query Sep 4, 2012

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Valerie Obenchain distanceToNearest Self Query Sep 5, 2012

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Tim Triche, Jr. distanceToNearest Self Query Sep 5, 2012

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Valerie Obenchain distanceToNearest Self Query Sep 5, 2012

[Bioc-devel] false alarm! (was Re: SummarizedExperiments)

1 msg Sep 5

T

Tim Triche, Jr. false alarm! (was Re: SummarizedExperiments) Sep 5, 2012