Bioc-devel - April 2013 - Thread View

[Bioc-devel] Fwd: [BioC] Problem reading VCF file using readVcf from package VariantAnnotation

8 msgs Apr 30

Vincent Carey Problem reading VCF file using readVcf from package VariantAnnotation Apr 25, 2013

Kasper Daniel Hansen Problem reading VCF file using readVcf from package VariantAnnotation Apr 25, 2013

Valerie Obenchain Problem reading VCF file using readVcf from package VariantAnnotation Apr 25, 2013

Marc Carlson Problem reading VCF file using readVcf from package VariantAnnotation Apr 30, 2013

Michael Lawrence Problem reading VCF file using readVcf from package VariantAnnotation Apr 30, 2013

Marc Carlson Problem reading VCF file using readVcf from package VariantAnnotation Apr 30, 2013

Michael Lawrence Problem reading VCF file using readVcf from package VariantAnnotation Apr 30, 2013

[Bioc-devel] Build error for package piano, issue in affy?

2 msgs Apr 30

Leif Väremo Build error for package piano, issue in affy? Apr 30, 2013

Vincent Carey Build error for package piano, issue in affy? Apr 30, 2013

[Bioc-devel] biocValid() and suggested solution

2 msgs Apr 26

Dan Tenenbaum biocValid() and suggested solution Apr 26, 2013

Martin Morgan biocValid() and suggested solution Apr 26, 2013

[Bioc-devel] Bioc 2013 Conference in Seattle, July 18-19 -- Updates

1 msg Apr 25

Martin Morgan Bioc 2013 Conference in Seattle, July 18-19 -- Updates Apr 25, 2013

[Bioc-devel] package download statistics

5 msgs Apr 23

Robert M. Flight package download statistics Apr 19, 2013

Neumann, Steffen package download statistics Apr 21, 2013

Martin Morgan package download statistics Apr 23, 2013

Hervé Pagès package download statistics Apr 23, 2013

Robert M. Flight package download statistics Apr 23, 2013

[Bioc-devel] normalize() is now defined in BiocGenerics

1 msg Apr 23

Hervé Pagès normalize() is now defined in BiocGenerics Apr 23, 2013

[Bioc-devel] good time for the "deprecated -> defunct -> removal" shift

1 msg Apr 22

Dan Tenenbaum good time for the "deprecated -> defunct -> removal" shift Apr 22, 2013

[Bioc-devel] good time for the "deprecated -> defunct -> removal" shift

1 msg Apr 22

Hervé Pagès good time for the "deprecated -> defunct -> removal" shift Apr 22, 2013

[Bioc-devel] Request to add 'normalize' to BiocGenerics

2 msgs Apr 22

Laurent Gatto Request to add 'normalize' to BiocGenerics Apr 22, 2013

Hervé Pagès Request to add 'normalize' to BiocGenerics Apr 22, 2013

[Bioc-devel] DESeq2 and <misc>Tranformsation(s)

4 msgs Apr 22

Steve Lianoglou DESeq2 and <misc>Tranformsation(s) Apr 19, 2013

Michael Love DESeq2 and <misc>Tranformsation(s) Apr 20, 2013

Steve Lianoglou DESeq2 and <misc>Tranformsation(s) Apr 21, 2013

Michael Love DESeq2 and <misc>Tranformsation(s) Apr 22, 2013

[Bioc-devel] FYI: new package 'piano'

1 msg Apr 22

Leif Väremo FYI: new package 'piano' Apr 22, 2013

[Bioc-devel] package download statistics

2 msgs Apr 20

Dan Tenenbaum package download statistics Apr 19, 2013

Robert M. Flight package download statistics Apr 20, 2013

[Bioc-devel] converting character vector to DNAStringSetList

6 msgs Apr 19

Stephanie M. Gogarten converting character vector to DNAStringSetList Apr 19, 2013

Tim Triche, Jr. converting character vector to DNAStringSetList Apr 19, 2013

Hervé Pagès converting character vector to DNAStringSetList Apr 19, 2013

Tim Triche, Jr. converting character vector to DNAStringSetList Apr 19, 2013

Hervé Pagès converting character vector to DNAStringSetList Apr 19, 2013

Stephanie M. Gogarten converting character vector to DNAStringSetList Apr 19, 2013

[Bioc-devel] Federation of sub-packages acceptable for Bioconductor?

2 msgs Apr 16

Ulrich Bodenhofer Federation of sub-packages acceptable for Bioconductor? Apr 16, 2013

Martin Morgan Federation of sub-packages acceptable for Bioconductor? Apr 16, 2013

[Bioc-devel] Change in edgeR interface in released version...

2 msgs Apr 14

Gordon K Smyth Change in edgeR interface in released version... Apr 13, 2013

Rory Stark Change in edgeR interface in released version... Apr 14, 2013

[Bioc-devel] pointer and big matrix in R

1 msg Apr 13

Martin Morgan pointer and big matrix in R Apr 13, 2013

[Bioc-devel] pointer and big matrix in R

3 msgs Apr 12

Servant Nicolas pointer and big matrix in R Apr 12, 2013

Vincent Carey pointer and big matrix in R Apr 12, 2013

Martin Morgan pointer and big matrix in R Apr 12, 2013

[Bioc-devel] ggbio: autoplot(TranscriptDb) slow at certain regions

3 msgs Apr 11

Julian Gehring ggbio: autoplot(TranscriptDb) slow at certain regions Apr 11, 2013

Tengfei Yin ggbio: autoplot(TranscriptDb) slow at certain regions Apr 11, 2013

[Bioc-devel] broken links for curatedOvarianData package

1 msg Apr 10

Levi Waldron broken links for curatedOvarianData package Apr 10, 2013

[Bioc-devel] broken links for curatedOvarianData package

1 msg Apr 10

Dan Tenenbaum broken links for curatedOvarianData package Apr 10, 2013

[Bioc-devel] broken links for curatedOvarianData package

1 msg Apr 10

Levi Waldron broken links for curatedOvarianData package Apr 10, 2013

[Bioc-devel] Change in edgeR interface in released version...

1 msg Apr 10

Rory Stark Change in edgeR interface in released version... Apr 10, 2013

[Bioc-devel] Bioconductor and the Google Summer of Code

1 msg Apr 9

Marc Carlson Bioconductor and the Google Summer of Code Apr 9, 2013

[Bioc-devel] DiffBind data loading question

1 msg Apr 9

Rory Stark DiffBind data loading question Apr 9, 2013

[Bioc-devel] MMDiff: new package for differential ChIP-Seq peaks

1 msg Apr 9

Gabriele Schweikert MMDiff: new package for differential ChIP-Seq peaks Apr 9, 2013

[Bioc-devel] RFC: IntervalTrees for GRanges objects

9 msgs Apr 8

Hector Corrada Bravo RFC: IntervalTrees for GRanges objects Apr 2, 2013

Michael Lawrence RFC: IntervalTrees for GRanges objects Apr 3, 2013

Hector Corrada Bravo RFC: IntervalTrees for GRanges objects Apr 3, 2013

Michael Lawrence RFC: IntervalTrees for GRanges objects Apr 3, 2013

Kasper Daniel Hansen RFC: IntervalTrees for GRanges objects Apr 3, 2013

Martin Morgan RFC: IntervalTrees for GRanges objects Apr 3, 2013

Michael Lawrence RFC: IntervalTrees for GRanges objects Apr 3, 2013

Laurent Gautier RFC: IntervalTrees for GRanges objects Apr 3, 2013

Hector Corrada Bravo RFC: IntervalTrees for GRanges objects Apr 8, 2013

[Bioc-devel] GLX extension missing on petty

9 msgs Apr 6

Dan Tenenbaum GLX extension missing on petty Apr 3, 2013

Jiří Hon GLX extension missing on petty Apr 3, 2013

Dan Tenenbaum GLX extension missing on petty Apr 4, 2013

Jiří Hon GLX extension missing on petty Apr 5, 2013

Dan Tenenbaum GLX extension missing on petty Apr 5, 2013

Jiří Hon GLX extension missing on petty Apr 6, 2013

Dan Tenenbaum GLX extension missing on petty Apr 6, 2013

[Bioc-devel] Biostrings: List with DNAString does not unlist

2 msgs Apr 4

Julian Gehring Biostrings: List with DNAString does not unlist Apr 4, 2013

Hervé Pagès Biostrings: List with DNAString does not unlist Apr 4, 2013

[Bioc-devel] Bioconductor 2.12 is released

1 msg Apr 4

Dan Tenenbaum Bioconductor 2.12 is released Apr 4, 2013

[Bioc-devel] BioC 2.12 branch created

1 msg Apr 3

Dan Tenenbaum BioC 2.12 branch created Apr 3, 2013

[Bioc-devel] Important: Bioconductor 2.12 branch to be created today

1 msg Apr 3

Dan Tenenbaum Important: Bioconductor 2.12 branch to be created today Apr 3, 2013

[Bioc-devel] GLX extension missing on petty

1 msg Apr 3

Jiří Hon GLX extension missing on petty Apr 3, 2013

[Bioc-devel] biocLite malfunctioning? and mzR package not working on R 3.0.0?

4 msgs Apr 3

Andreas Heider biocLite malfunctioning? and mzR package not working on R 3.0.0? Apr 3, 2013

Neumann, Steffen biocLite malfunctioning? and mzR package not working on R 3.0.0? Apr 3, 2013

Andreas Heider biocLite malfunctioning? and mzR package not working on R 3.0.0? Apr 3, 2013

Dan Tenenbaum biocLite malfunctioning? and mzR package not working on R 3.0.0? Apr 3, 2013

[Bioc-devel] Bioconductor coding standards

4 msgs Apr 2

Alejandra Gonzalez-Beltran Bioconductor coding standards Apr 2, 2013

Martin Morgan Bioconductor coding standards Apr 2, 2013

Hervé Pagès Bioconductor coding standards Apr 2, 2013

Martin Morgan Bioconductor coding standards Apr 2, 2013

[Bioc-devel] Biggest Fake Conference in Computer Science

1 msg Apr 2

newtonhanes at hushmail.com Biggest Fake Conference in Computer Science Apr 2, 2013

Bioc-devel April 2013