Skip to content

Bioc-devel September 2015

|
[Bioc-devel] Adding a lengths() method to List class
8 msgs
Peter Hickey Adding a lengths() method to List class Sep 28, 2015
Michael Lawrence Adding a lengths() method to List class Sep 28, 2015
Cook, Malcolm Adding a lengths() method to List class Sep 29, 2015
Michael Lawrence Adding a lengths() method to List class Sep 29, 2015
Cook, Malcolm Adding a lengths() method to List class Sep 29, 2015
Hervé Pagès Adding a lengths() method to List class Sep 30, 2015
Michael Lawrence Adding a lengths() method to List class Sep 30, 2015
Hervé Pagès Adding a lengths() method to List class Sep 30, 2015
[Bioc-devel] packages marked as deprecated in the upcoming release
1 msg
Dan Tenenbaum packages marked as deprecated in the upcoming release Sep 30, 2015
[Bioc-devel] BiocCheck failing
2 msgs
Samuel E Zimmerman BiocCheck failing Sep 30, 2015
Dan Tenenbaum BiocCheck failing Sep 30, 2015
[Bioc-devel] S4 classes extending GRangesList
3 msgs
Leonard Goldstein S4 classes extending GRangesList Sep 29, 2015
Hervé Pagès S4 classes extending GRangesList Sep 29, 2015
Leonard Goldstein S4 classes extending GRangesList Sep 29, 2015
[Bioc-devel] Problem with the git mirror when committing to SVN
5 msgs
Diego Diez Problem with the git mirror when committing to SVN Sep 7, 2015
Diego Diez Problem with the git mirror when committing to SVN Sep 18, 2015
Jesper Gådin Problem with the git mirror when committing to SVN Sep 18, 2015
Diego Diez Problem with the git mirror when committing to SVN Sep 18, 2015
Jesper Gådin Problem with the git mirror when committing to SVN Sep 29, 2015
[Bioc-devel] Change package maintainer
1 msg
Dan Tenenbaum Change package maintainer Sep 28, 2015
[Bioc-devel] Change package maintainer
1 msg
Matthew McCall Change package maintainer Sep 28, 2015
[Bioc-devel] Shouldn't we distinguish between package-specific and dependency errors?]
1 msg
Dan Tenenbaum Shouldn't we distinguish between package-specific and dependency errors?] Sep 25, 2015
[Bioc-devel] Shouldn't we distinguish between package-specific and dependency errors?]
2 msgs
Ludwig Geistlinger Shouldn't we distinguish between package-specific and dependency errors?] Sep 24, 2015
Angerer, Philipp Shouldn't we distinguish between package-specific and dependency errors?] Sep 25, 2015
[Bioc-devel] Shouldn't we distinguish between package-specific and dependency errors?]
5 msgs
Ludwig Geistlinger Shouldn't we distinguish between package-specific and dependency errors?] Sep 24, 2015
Michael Lawrence Shouldn't we distinguish between package-specific and dependency errors?] Sep 24, 2015
Gabriel Becker Shouldn't we distinguish between package-specific and dependency errors?] Sep 24, 2015
Martin Morgan Shouldn't we distinguish between package-specific and dependency errors?] Sep 24, 2015
Kasper Daniel Hansen Shouldn't we distinguish between package-specific and dependency errors?] Sep 24, 2015
[Bioc-devel] KEGG REST issue
11 msgs
Luo Weijun KEGG REST issue Sep 23, 2015
Dan Tenenbaum KEGG REST issue Sep 23, 2015
Ludwig Geistlinger Shouldn't we distinguish between package-specific and dependency errors? Sep 24, 2015
Vincent Carey Shouldn't we distinguish between package-specific and dependency errors? Sep 24, 2015
Ludwig Geistlinger Shouldn't we distinguish between package-specific and dependency errors? Sep 24, 2015
Wolfgang Huber Shouldn't we distinguish between package-specific and dependency errors? Sep 24, 2015
Andrzej Oleś Shouldn't we distinguish between package-specific and dependency errors? Sep 24, 2015
Michael Lawrence Shouldn't we distinguish between package-specific and dependency errors? Sep 24, 2015
Dan Tenenbaum Shouldn't we distinguish between package-specific and dependency errors? Sep 24, 2015
Andrzej Oleś Shouldn't we distinguish between package-specific and dependency errors? Sep 24, 2015
Dan Tenenbaum Shouldn't we distinguish between package-specific and dependency errors? Sep 24, 2015
[Bioc-devel] rgl on windows build servers
3 msgs
Dan Tenenbaum rgl on windows build servers Sep 23, 2015
Kasper Daniel Hansen rgl on windows build servers Sep 23, 2015
Dan Tenenbaum rgl on windows build servers Sep 23, 2015
[Bioc-devel] rgl on windows build servers
1 msg
Kasper Daniel Hansen rgl on windows build servers Sep 23, 2015
[Bioc-devel] Packge Build Status Notifications Missing
3 msgs
Dan Tenenbaum Packge Build Status Notifications Missing Sep 23, 2015
Malcolm Perry Packge Build Status Notifications Missing Sep 23, 2015
Dan Tenenbaum Packge Build Status Notifications Missing Sep 23, 2015
[Bioc-devel] Packge Build Status Notifications Missing
1 msg
Malcolm Perry Packge Build Status Notifications Missing Sep 23, 2015
[Bioc-devel] Issues with R CMD check and an ExperimentalData package
2 msgs
Dan Tenenbaum Issues with R CMD check and an ExperimentalData package Sep 22, 2015
Andrzej Oleś Issues with R CMD check and an ExperimentalData package Sep 23, 2015
[Bioc-devel] Txdb Issues - all exon names are NA's ?
6 msgs
Arora, Sonali Txdb Issues - all exon names are NA's ? Sep 22, 2015
Hervé Pagès Txdb Issues - all exon names are NA's ? Sep 22, 2015
Marc Carlson Txdb Issues - all exon names are NA's ? Sep 22, 2015
Arora, Sonali Txdb Issues - all exon names are NA's ? Sep 22, 2015
Hervé Pagès Txdb Issues - all exon names are NA's ? Sep 22, 2015
Marc Carlson Txdb Issues - all exon names are NA's ? Sep 22, 2015
[Bioc-devel] Issues with R CMD check and an ExperimentalData package
1 msg
Dan Tenenbaum Issues with R CMD check and an ExperimentalData package Sep 22, 2015
[Bioc-devel] Issues with R CMD check and an ExperimentalData package
1 msg
Christian Arnold Issues with R CMD check and an ExperimentalData package Sep 22, 2015
[Bioc-devel] seq2pathway_1.1.5 is available for testing
1 msg
Holly seq2pathway_1.1.5 is available for testing Sep 22, 2015
[Bioc-devel] Merging git mirror and previous git repo ?
1 msg
Mike Merging git mirror and previous git repo ? Sep 22, 2015
[Bioc-devel] (crazy) copy-on-modification bug in GenomicFeatures
2 msgs
Kasper Daniel Hansen (crazy) copy-on-modification bug in GenomicFeatures Sep 21, 2015
Hervé Pagès (crazy) copy-on-modification bug in GenomicFeatures Sep 22, 2015
[Bioc-devel] Proper way of documenting a BiocGenerics generics with extended prototypes
7 msgs
Christian Arnold Proper way of documenting a BiocGenerics generics with extended prototypes Sep 20, 2015
Jim Hester Proper way of documenting a BiocGenerics generics with extended prototypes Sep 20, 2015
Kasper Daniel Hansen Proper way of documenting a BiocGenerics generics with extended prototypes Sep 20, 2015
Hervé Pagès Proper way of documenting a BiocGenerics generics with extended prototypes Sep 20, 2015
Christian Arnold Proper way of documenting a BiocGenerics generics with extended prototypes Sep 21, 2015
Hervé Pagès Proper way of documenting a BiocGenerics generics with extended prototypes Sep 21, 2015
Hervé Pagès Proper way of documenting a BiocGenerics generics with extended prototypes Sep 21, 2015
[Bioc-devel] Merging git mirror and previous git repo ?
4 msgs
Neumann, Steffen Merging git mirror and previous git repo ? Sep 18, 2015
Robert M. Flight Merging git mirror and previous git repo ? Sep 18, 2015
Neumann, Steffen Merging git mirror and previous git repo ? Sep 21, 2015
Jim Hester Merging git mirror and previous git repo ? Sep 21, 2015
[Bioc-devel] SummarizedExperiment with alternate back end
13 msgs
Vincent Carey SummarizedExperiment with alternate back end Sep 18, 2015
Hervé Pagès SummarizedExperiment with alternate back end Sep 18, 2015
Tim Triche, Jr. SummarizedExperiment with alternate back end Sep 18, 2015
Peter Haverty SummarizedExperiment with alternate back end Sep 18, 2015
Vincent Carey SummarizedExperiment with alternate back end Sep 18, 2015
Kasper Daniel Hansen SummarizedExperiment with alternate back end Sep 18, 2015
Ryan SummarizedExperiment with alternate back end Sep 18, 2015
Peter Haverty SummarizedExperiment with alternate back end Sep 18, 2015
Michael Lawrence SummarizedExperiment with alternate back end Sep 18, 2015
Ryan SummarizedExperiment with alternate back end Sep 18, 2015
Martin Morgan SummarizedExperiment with alternate back end Sep 19, 2015
Benilton Carvalho SummarizedExperiment with alternate back end Sep 19, 2015
Vincent Carey SummarizedExperiment with alternate back end Sep 19, 2015
[Bioc-devel] rtracklayer: BigWigFIle on Windows
4 msgs
Kasper Daniel Hansen rtracklayer: BigWigFIle on Windows Sep 17, 2015
Michael Lawrence rtracklayer: BigWigFIle on Windows Sep 17, 2015
Kasper Daniel Hansen rtracklayer: BigWigFIle on Windows Sep 17, 2015
Michael Lawrence rtracklayer: BigWigFIle on Windows Sep 17, 2015
[Bioc-devel] AnnotationHub: cleanup
6 msgs
Kasper Daniel Hansen AnnotationHub: cleanup Sep 14, 2015
Martin Morgan AnnotationHub: cleanup Sep 14, 2015
Kasper Daniel Hansen AnnotationHub: cleanup Sep 15, 2015
Martin Morgan AnnotationHub: cleanup Sep 15, 2015
Vincent Carey AnnotationHub: cleanup Sep 17, 2015
Kasper Daniel Hansen AnnotationHub: cleanup Sep 17, 2015
[Bioc-devel] as.character method for GenomicRanges?
5 msgs
Michael Lawrence as.character method for GenomicRanges? Sep 15, 2015
Michael Love as.character method for GenomicRanges? Sep 15, 2015
Hervé Pagès as.character method for GenomicRanges? Sep 15, 2015
Tim Triche, Jr. as.character method for GenomicRanges? Sep 15, 2015
Hervé Pagès as.character method for GenomicRanges? Sep 17, 2015
[Bioc-devel] Open developer position
1 msg
Hector Corrada Bravo Open developer position Sep 17, 2015
[Bioc-devel] adding a coathor to the tracker
1 msg
Stepan Grinek adding a coathor to the tracker Sep 17, 2015
[Bioc-devel] GEOquery: missing ID causes GDS2eSet to crash
1 msg
Ludwig Geistlinger GEOquery: missing ID causes GDS2eSet to crash Sep 17, 2015
[Bioc-devel] Package deprecation and reacceptance
2 msgs
Glyn Bradley Package deprecation and reacceptance Sep 16, 2015
Dan Tenenbaum Package deprecation and reacceptance Sep 16, 2015
[Bioc-devel] Issue on MEDIPS.CpGenrich function
1 msg
Welliton Souza Issue on MEDIPS.CpGenrich function Sep 16, 2015
[Bioc-devel] Announcing newtest coverage shields
3 msgs
Andrzej Oleś Announcing newtest coverage shields Sep 10, 2015
Dan Tenenbaum Announcing newtest coverage shields Sep 10, 2015
Andrzej Oleś Announcing newtest coverage shields Sep 15, 2015
[Bioc-devel] some issues with windows build under stable bio
1 msg
Kasper Daniel Hansen some issues with windows build under stable bio Sep 14, 2015
[Bioc-devel] Bioconductor Git/GitHub Mirrors
1 msg
Mike Bioconductor Git/GitHub Mirrors Sep 11, 2015
[Bioc-devel] new Bioconductor team members
5 msgs
Obenchain, Valerie new Bioconductor team members Sep 8, 2015
Michael Lawrence new Bioconductor team members Sep 8, 2015
Zhu, Lihua (Julie) new Bioconductor team members Sep 8, 2015
Ou, Jianhong new Bioconductor team members Sep 9, 2015
Jan Janečka new Bioconductor team members Sep 11, 2015
[Bioc-devel] svn cleanup failing on macosx
1 msg
Vincent Carey svn cleanup failing on macosx Sep 9, 2015
[Bioc-devel] http://bioconductor.org/about/core-team/ could probably stand an update
1 msg
Dan Tenenbaum http://bioconductor.org/about/core-team/ could probably stand an update Sep 8, 2015
[Bioc-devel] http://bioconductor.org/about/core-team/ could probably stand an update
1 msg
Tim Triche, Jr. http://bioconductor.org/about/core-team/ could probably stand an update Sep 8, 2015
[Bioc-devel] timeout on perceval server macos snow leopard
3 msgs
Giorgio Melloni timeout on perceval server macos snow leopard Sep 4, 2015
Obenchain, Valerie timeout on perceval server macos snow leopard Sep 4, 2015
Giorgio Melloni timeout on perceval server macos snow leopard Sep 8, 2015
[Bioc-devel] search broken on bioconductor.org
1 msg
Dan Tenenbaum search broken on bioconductor.org Sep 7, 2015
[Bioc-devel] search broken on bioconductor.org
1 msg
Ryan search broken on bioconductor.org Sep 7, 2015
[Bioc-devel] Problem with git svn rebase
1 msg
Dan Tenenbaum Problem with git svn rebase Sep 7, 2015
[Bioc-devel] Problem with git svn rebase
1 msg
Witold E Wolski Problem with git svn rebase Sep 7, 2015
[Bioc-devel] BiocParallel::bpvec() and DNAStringSet objects, problem
2 msgs
Obenchain, Valerie BiocParallel::bpvec() and DNAStringSet objects, problem Sep 4, 2015
Robert Castelo BiocParallel::bpvec() and DNAStringSet objects, problem Sep 4, 2015
[Bioc-devel] Bioconductor 3.2 release schedule now available
1 msg
Dan Tenenbaum Bioconductor 3.2 release schedule now available Sep 4, 2015
[Bioc-devel] European Bioconductor Developers Meeting
1 msg
Mark Dunning European Bioconductor Developers Meeting Sep 3, 2015
[Bioc-devel] BiocCheck required import
6 msgs
Dan Tenenbaum BiocCheck required import Sep 3, 2015
Dan Tenenbaum BiocCheck required import Sep 3, 2015
Thomas Lin Pedersen BiocCheck required import Sep 3, 2015
Dan Tenenbaum BiocCheck required import Sep 3, 2015
Thomas Lin Pedersen BiocCheck required import Sep 3, 2015
Dan Tenenbaum BiocCheck required import Sep 3, 2015
[Bioc-devel] BiocCheck required import
1 msg
Thomas Lin Pedersen BiocCheck required import Sep 3, 2015
[Bioc-devel] BiocParallel::bpvec() and DNAStringSet objects, problem
1 msg
Robert Castelo BiocParallel::bpvec() and DNAStringSet objects, problem Sep 2, 2015
[Bioc-devel] submitted package update
3 msgs
Zhilong Jia submitted package update Sep 1, 2015
Sean Davis submitted package update Sep 1, 2015
Zhilong Jia submitted package update Sep 1, 2015
[Bioc-devel] Dependencies in Bioconductor dockers
1 msg
Nathan Sheffield Dependencies in Bioconductor dockers Aug 31, 2015