Bioc-devel - February 2016 - Thread View

[Bioc-devel] git svn mirrors

1 msg Feb 29

Dan Tenenbaum git svn mirrors Feb 29, 2016

[Bioc-devel] git svn mirrors

1 msg Feb 29

Davis McCarthy git svn mirrors Feb 29, 2016

[Bioc-devel] package build : Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE

1 msg Feb 28

Dan Tenenbaum package build : Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE Feb 28, 2016

[Bioc-devel] package build : Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE

1 msg Feb 28

Diana LOW (IMCB) package build : Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE Feb 28, 2016

[Bioc-devel] workflows running Bioc-devel

4 msgs Feb 28

Aaron Lun workflows running Bioc-devel Feb 28, 2016

Michael Love workflows running Bioc-devel Feb 28, 2016

Dan Tenenbaum workflows running Bioc-devel Feb 28, 2016

Aaron Lun workflows running Bioc-devel Feb 28, 2016

[Bioc-devel] GenVisR vignette build issues

3 msgs Feb 27

Dan Tenenbaum GenVisR vignette build issues Feb 27, 2016

[Bioc-devel] GenVisR vignette build issues

1 msg Feb 27

Zach Skidmore GenVisR vignette build issues Feb 27, 2016

[Bioc-devel] BiocStyle markdown, pdf and html

4 msgs Feb 26

Kasper Daniel Hansen BiocStyle markdown, pdf and html Feb 26, 2016

Andrzej Oleś BiocStyle markdown, pdf and html Feb 26, 2016

Henrik Bengtsson BiocStyle markdown, pdf and html Feb 26, 2016

Peter Humburg BiocStyle markdown, pdf and html Feb 26, 2016

[Bioc-devel] Using non-CRAN/Bioc package

2 msgs Feb 26

Dan Tenenbaum Using non-CRAN/Bioc package Feb 25, 2016

Boris Steipe Using non-CRAN/Bioc package Feb 26, 2016

[Bioc-devel] suggestions for minfi

1 msg Feb 26

Maarten van Iterson suggestions for minfi Feb 26, 2016

[Bioc-devel] Using non-CRAN/Bioc package

1 msg Feb 25

Diana LOW (IMCB) Using non-CRAN/Bioc package Feb 25, 2016

[Bioc-devel] Bioconductor 3.3 release schedule

2 msgs Feb 25

Dan Tenenbaum Bioconductor 3.3 release schedule Feb 19, 2016

Dan Tenenbaum Bioconductor 3.3 release schedule Feb 25, 2016

[Bioc-devel] Deadline for new package submissions for this release

1 msg Feb 25

Martin Morgan Deadline for new package submissions for this release Feb 25, 2016

[Bioc-devel] R CMD check problems

7 msgs Feb 25

Vincent Carey R CMD check problems Feb 25, 2016

Martin Morgan bnlearn method / generic definition (was Re: R CMD check problems) Feb 25, 2016

Luca De Sano R CMD check problems Feb 25, 2016

Dan Tenenbaum R CMD check problems Feb 25, 2016

Joris Meys R CMD check problems Feb 25, 2016

Luca De Sano R CMD check problems Feb 25, 2016

Dan Tenenbaum R CMD check problems Feb 25, 2016

[Bioc-devel] R CMD check problems

1 msg Feb 25

Luca De Sano R CMD check problems Feb 25, 2016

[Bioc-devel] dimnames of multidimensional assays in SummarizedExperiment

1 msg Feb 24

Hervé Pagès dimnames of multidimensional assays in SummarizedExperiment Feb 24, 2016

[Bioc-devel] Git svn mirror: Duplicated commit entries (introduced by git svn rebase?)

2 msgs Feb 23

Dan Tenenbaum Git svn mirror: Duplicated commit entries (introduced by git svn rebase?) Feb 23, 2016

Jim Hester Git svn mirror: Duplicated commit entries (introduced by git svn rebase?) Feb 23, 2016

[Bioc-devel] CFP: metaRbolomics workshop at the 2016 Metabolomics Society conference in Dublin

1 msg Feb 23

Neumann, Steffen CFP: metaRbolomics workshop at the 2016 Metabolomics Society conference in Dublin Feb 23, 2016

[Bioc-devel] how to define parallelVectorNames()

2 msgs Feb 22

Aaron Lun how to define parallelVectorNames() Feb 22, 2016

Michael Lawrence how to define parallelVectorNames() Feb 22, 2016

[Bioc-devel] Course: Statistics and Computing in Genome Data Science, July 10-15, 2016

1 msg Feb 22

Martin Morgan Course: Statistics and Computing in Genome Data Science, July 10-15, 2016 Feb 22, 2016

[Bioc-devel] bplapply Processes Sometimes Stall

2 msgs Feb 22

Dario Strbenac bplapply Processes Sometimes Stall Feb 22, 2016

Martin Morgan bplapply Processes Sometimes Stall Feb 22, 2016

[Bioc-devel] Git svn mirror: Duplicated commit entries (introduced by git svn rebase?)

1 msg Feb 19

Henrik Bengtsson Git svn mirror: Duplicated commit entries (introduced by git svn rebase?) Feb 19, 2016

[Bioc-devel] github mirror

3 msgs Feb 19

Dan Tenenbaum github mirror Feb 19, 2016

Kasper Daniel Hansen github mirror Feb 19, 2016

[Bioc-devel] github mirror

1 msg Feb 19

Kasper Daniel Hansen github mirror Feb 19, 2016

[Bioc-devel] [Bio-dev]: how to iterate and index set of bed files ?

1 msg Feb 19

Jurat Shayidin : how to iterate and index set of bed files ? Feb 19, 2016

[Bioc-devel] specify the color in plotMutationSpectrum() of SomaticSignatures library

2 msgs Feb 18

sun specify the color in plotMutationSpectrum() of SomaticSignatures library Feb 17, 2016

Wolfgang Huber specify the color in plotMutationSpectrum() of SomaticSignatures library Feb 18, 2016

[Bioc-devel] Strand-Awareness for Restrict Function

1 msg Feb 18

Hervé Pagès Strand-Awareness for Restrict Function Feb 18, 2016

[Bioc-devel] Efficient Random Sampling of Positions in GRanges

5 msgs Feb 18

Dario Strbenac Efficient Random Sampling of Positions in GRanges Feb 16, 2016

Bernat Gel Efficient Random Sampling of Positions in GRanges Feb 16, 2016

Hervé Pagès Efficient Random Sampling of Positions in GRanges Feb 16, 2016

Dario Strbenac Efficient Random Sampling of Positions in GRanges Feb 18, 2016

Hervé Pagès Efficient Random Sampling of Positions in GRanges Feb 18, 2016

[Bioc-devel] GenVisR Release

1 msg Feb 17

Zach Skidmore GenVisR Release Feb 17, 2016

[Bioc-devel] Strand-Awareness for Restrict Function

4 msgs Feb 16

Dario Strbenac Strand-Awareness for Restrict Function Feb 14, 2016

Hervé Pagès Strand-Awareness for Restrict Function Feb 16, 2016

Kasper Daniel Hansen Strand-Awareness for Restrict Function Feb 16, 2016

Hervé Pagès Strand-Awareness for Restrict Function Feb 16, 2016

[Bioc-devel] BiocGenerics attaches when methods package is imported

3 msgs Feb 16

Andreas Kapouranis BiocGenerics attaches when methods package is imported Feb 16, 2016

Yuande Tan BiocGenerics attaches when methods package is imported Feb 16, 2016

Dan Tenenbaum BiocGenerics attaches when methods package is imported Feb 16, 2016

[Bioc-devel] dimnames of multidimensional assays in SummarizedExperiment

1 msg Feb 15

Hervé Pagès dimnames of multidimensional assays in SummarizedExperiment Feb 15, 2016

[Bioc-devel] package citation and version is not updated

2 msgs Feb 15

Michael Love package citation and version is not updated Feb 15, 2016

Dan Tenenbaum package citation and version is not updated Feb 15, 2016

[Bioc-devel] BiocGenerics attaches when methods package is imported

5 msgs Feb 15

Andreas Kapouranis BiocGenerics attaches when methods package is imported Feb 15, 2016

Joris Meys BiocGenerics attaches when methods package is imported Feb 15, 2016

Michael Lawrence BiocGenerics attaches when methods package is imported Feb 15, 2016

Andreas Kapouranis BiocGenerics attaches when methods package is imported Feb 15, 2016

[Bioc-devel] Close connections continuously in fasta.index in Biostrings

1 msg Feb 15

Thomas Lin Pedersen Close connections continuously in fasta.index in Biostrings Feb 15, 2016

[Bioc-devel] dimnames of multidimensional assays in SummarizedExperiment

1 msg Feb 10

Peter Hickey dimnames of multidimensional assays in SummarizedExperiment Feb 10, 2016

[Bioc-devel] File Layout

2 msgs Feb 10

Val Krem File Layout Feb 9, 2016

Vincent Carey File Layout Feb 10, 2016

[Bioc-devel] BiocCheck not passing at test check phase

1 msg Feb 9

Dan Tenenbaum BiocCheck not passing at test check phase Feb 9, 2016

[Bioc-devel] BiocCheck not passing at test check phase

1 msg Feb 9

Marcel Ramos BiocCheck not passing at test check phase Feb 9, 2016

[Bioc-devel] Classes to be supported by ggraph

4 msgs Feb 7

Thomas Lin Pedersen Classes to be supported by ggraph Feb 6, 2016

Wolfgang Huber Classes to be supported by ggraph Feb 6, 2016

Kasper Daniel Hansen Classes to be supported by ggraph Feb 6, 2016

Robert Castelo Classes to be supported by ggraph Feb 7, 2016

[Bioc-devel] Classes to be supported by ggraph

1 msg Feb 7

Paul Shannon Classes to be supported by ggraph Feb 7, 2016

[Bioc-devel] topGO and cat() and print() statements in program code

9 msgs Feb 5

Witold E Wolski topGO and cat() and print() statements in program code Feb 2, 2016

James W. MacDonald topGO and cat() and print() statements in program code Feb 2, 2016

Martin Morgan topGO and cat() and print() statements in program code Feb 3, 2016

Dan Tenenbaum topGO and cat() and print() statements in program code Feb 3, 2016

Witold E Wolski topGO and cat() and print() statements in program code Feb 4, 2016

Witold E Wolski topGO and cat() and print() statements in program code Feb 5, 2016

Martin Morgan topGO and cat() and print() statements in program code Feb 5, 2016

Witold E Wolski topGO and cat() and print() statements in program code Feb 5, 2016

[Bioc-devel] JunctionSeq Release

1 msg Feb 4

Hartley, Stephen (NIH/NHGRI) [F] JunctionSeq Release Feb 4, 2016

[Bioc-devel] Vignette package error

4 msgs Feb 3

Dan Tenenbaum Vignette package error Feb 2, 2016

Jason Ross Vignette package error Feb 3, 2016

Dan Tenenbaum Vignette package error Feb 3, 2016

Jason Ross Vignette package error Feb 3, 2016

[Bioc-devel] Out of sync repo between svn and the Bioc git mirror

2 msgs Feb 3

Dan Tenenbaum Out of sync repo between svn and the Bioc git mirror Feb 3, 2016

Leonardo Collado Torres Out of sync repo between svn and the Bioc git mirror Feb 3, 2016

[Bioc-devel] Out of sync repo between svn and the Bioc git mirror

1 msg Feb 3

Leonardo Collado Torres Out of sync repo between svn and the Bioc git mirror Feb 3, 2016

[Bioc-devel] Warnings on moscato2 SinglePackage Builder

2 msgs Feb 3

Hervé Pagès Warnings on moscato2 SinglePackage Builder Feb 3, 2016

Thomas Lin Pedersen Warnings on moscato2 SinglePackage Builder Feb 3, 2016

[Bioc-devel] Vignette package error

1 msg Feb 2

Jason Ross Vignette package error Feb 2, 2016

[Bioc-devel] Git-svn issue with release version of XBSeq

5 msgs Feb 2

Liu, Yuanhang Git-svn issue with release version of XBSeq Feb 2, 2016

Dan Tenenbaum Git-svn issue with release version of XBSeq Feb 2, 2016

Liu, Yuanhang Git-svn issue with release version of XBSeq Feb 2, 2016

Dan Tenenbaum Git-svn issue with release version of XBSeq Feb 2, 2016

Liu, Yuanhang Git-svn issue with release version of XBSeq Feb 2, 2016

[Bioc-devel] question about citation file

2 msgs Feb 2

Samuel E Zimmerman question about citation file Feb 2, 2016

Dan Tenenbaum question about citation file Feb 2, 2016

[Bioc-devel] seqlevelsStyle: EnsDb integration with UCSC based annotations

1 msg Feb 1

Rainer Johannes seqlevelsStyle: EnsDb integration with UCSC based annotations Feb 1, 2016

[Bioc-devel] TIMEOUTs on Morelia

7 msgs Feb 1

Dan Tenenbaum TIMEOUTs on Morelia Feb 1, 2016

Michael Love TIMEOUTs on Morelia Feb 1, 2016

Martin Morgan TIMEOUTs on Morelia Feb 1, 2016

Hervé Pagès TIMEOUTs on Morelia Feb 1, 2016

Michael Love TIMEOUTs on Morelia Feb 1, 2016

[Bioc-devel] AnnotationHub server downtime - Friday, Feb 5, 12:00PM-4:00PM PST

1 msg Feb 1

Dan Tenenbaum AnnotationHub server downtime - Friday, Feb 5, 12:00PM-4:00PM PST Feb 1, 2016

[Bioc-devel] TIMEOUTs on Morelia

1 msg Feb 1

Hartley, Stephen (NIH/NHGRI) [F] TIMEOUTs on Morelia Feb 1, 2016

Bioc-devel February 2016