Bioc-devel September 2016

[Bioc-devel] package review help

5 msgs Sep 30

K

Kasper Daniel Hansen package review help Sep 30, 2016

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Michael Lawrence package review help Sep 30, 2016

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Tim Triche, Jr. package review help Sep 30, 2016

M

Martin Morgan package review help Sep 30, 2016

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Vincent Carey package review help Sep 30, 2016

[Bioc-devel] "Feature-freeze" deadline for new packages

1 msg Sep 30

L

Lukas Weber "Feature-freeze" deadline for new packages Sep 30, 2016

[Bioc-devel] TxDbs for Bioconductor 3.4

1 msg Sep 29

O

Obenchain, Valerie TxDbs for Bioconductor 3.4 Sep 29, 2016

[Bioc-devel] Change in the function getHPa( ) of the hpar package

5 msgs Sep 29

R

Rodriguez Martinez, Andrea Change in the function getHPa( ) of the hpar package Sep 29, 2016

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Shepherd, Lori Change in the function getHPa( ) of the hpar package Sep 29, 2016

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Rodriguez Martinez, Andrea Change in the function getHPa( ) of the hpar package Sep 29, 2016

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Laurent Gatto Change in the function getHPa( ) of the hpar package Sep 29, 2016

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Rodriguez Martinez, Andrea Change in the function getHPa( ) of the hpar package Sep 29, 2016

[Bioc-devel] Package submission

4 msgs Sep 29

L

Lidia Chrabąszcz Package submission Sep 29, 2016

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Shepherd, Lori Package submission Sep 29, 2016

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Kasper Daniel Hansen Package submission Sep 29, 2016

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Shepherd, Lori Package submission Sep 29, 2016

[Bioc-devel] unit test results not showing up for BridgeDbR?

3 msgs Sep 29

E

Egon Willighagen unit test results not showing up for BridgeDbR? Sep 29, 2016

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Obenchain, Valerie unit test results not showing up for BridgeDbR? Sep 29, 2016

E

Egon Willighagen unit test results not showing up for BridgeDbR? Sep 29, 2016

[Bioc-devel] Git mirrors

2 msgs Sep 29

A

Alejandra Gonzalez-Beltran Git mirrors Sep 29, 2016

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Martin Morgan Git mirrors Sep 29, 2016

[Bioc-devel] Build warnings on moscato1

3 msgs Sep 28

J

Janssen-10, R.R.E. Build warnings on moscato1 Sep 28, 2016

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Shepherd, Lori Build warnings on moscato1 Sep 28, 2016

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Shepherd, Lori Build warnings on moscato1 Sep 28, 2016

[Bioc-devel] Bioconductor 3.4 annotation packages

1 msg Sep 28

O

Obenchain, Valerie Bioconductor 3.4 annotation packages Sep 28, 2016

[Bioc-devel] VCF Intersection Using readVcf Remarkably Slow

4 msgs Sep 28

D

Dario Strbenac VCF Intersection Using readVcf Remarkably Slow Sep 27, 2016

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Michael Lawrence VCF Intersection Using readVcf Remarkably Slow Sep 27, 2016

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Vincent Carey VCF Intersection Using readVcf Remarkably Slow Sep 28, 2016

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Martin Morgan VCF Intersection Using readVcf Remarkably Slow Sep 28, 2016

[Bioc-devel] Package pages: Link to NEWS gone?

2 msgs Sep 28

H

Henrik Bengtsson Package pages: Link to NEWS gone? Sep 21, 2016

A

Andrzej Oleś Package pages: Link to NEWS gone? Sep 28, 2016

[Bioc-devel] SSL connect error on package build machine

2 msgs Sep 27

D

Dan Tenenbaum SSL connect error on package build machine Sep 27, 2016

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Tyler Smith SSL connect error on package build machine Sep 27, 2016

[Bioc-devel] SSL connect error on package build machine

1 msg Sep 27

T

Tyler Smith SSL connect error on package build machine Sep 27, 2016

[Bioc-devel] Warning when Reading Example VCF

2 msgs Sep 27

D

Dario Strbenac Warning when Reading Example VCF Sep 27, 2016

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Obenchain, Valerie Warning when Reading Example VCF Sep 27, 2016

[Bioc-devel] Package submission deadline

3 msgs Sep 26

J

Janssen-10, R.R.E. Package submission deadline Sep 26, 2016

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Martin Morgan Package submission deadline Sep 26, 2016

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Janssen-10, R.R.E. Package submission deadline Sep 26, 2016

[Bioc-devel] Windows build error for outdated Shiny package

3 msgs Sep 25

N

Nuno Agostinho Windows build error for outdated Shiny package Sep 24, 2016

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Martin Morgan Windows build error for outdated Shiny package Sep 24, 2016

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Chen Hao Windows build error for outdated Shiny package Sep 25, 2016

[Bioc-devel] Reading and storing single cell ATAC data

1 msg Sep 23

H

Hervé Pagès Reading and storing single cell ATAC data Sep 23, 2016

[Bioc-devel] Reading and storing single cell ATAC data

1 msg Sep 23

A

Andrew McDavid Reading and storing single cell ATAC data Sep 23, 2016

[Bioc-devel] Reading and storing single cell ATAC data

2 msgs Sep 23

C

Caleb Lareau Reading and storing single cell ATAC data Sep 23, 2016

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Bemis, Kylie Reading and storing single cell ATAC data Sep 23, 2016

[Bioc-devel] Invalid biocViews terms

2 msgs Sep 23

M

Martin Morgan Invalid biocViews terms Sep 23, 2016

M

Martin Morgan Invalid biocViews terms Sep 23, 2016

[Bioc-devel] JAGS 4.X.Y not installed on Windows (tokay1)

3 msgs Sep 23

H

Hervé Pagès JAGS 4.X.Y not installed on Windows (tokay1) Sep 22, 2016

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Yu Kong JAGS 4.X.Y not installed on Windows (tokay1) Sep 23, 2016

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Hervé Pagès JAGS 4.X.Y not installed on Windows (tokay1) Sep 23, 2016

[Bioc-devel] Package warning due to function replacement

3 msgs Sep 23

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THEVENOT Etienne 207099 Package warning due to function replacement Sep 23, 2016

K

Kasper Daniel Hansen Package warning due to function replacement Sep 23, 2016

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Michael Lawrence Package warning due to function replacement Sep 23, 2016

[Bioc-devel] platforms "some" on devel?

5 msgs Sep 23

R

Ramon Diaz-Uriarte platforms "some" on devel? Sep 22, 2016

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Hervé Pagès platforms "some" on devel? Sep 22, 2016

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Ramon Diaz-Uriarte platforms "some" on devel? Sep 22, 2016

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Hervé Pagès platforms "some" on devel? Sep 22, 2016

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Ramon Diaz-Uriarte platforms "some" on devel? Sep 23, 2016

[Bioc-devel] update on devel builds

1 msg Sep 22

H

Hervé Pagès update on devel builds Sep 22, 2016

[Bioc-devel] JAGS 4.X.Y not installed on Windows (tokay1)

1 msg Sep 22

Y

Yu Kong JAGS 4.X.Y not installed on Windows (tokay1) Sep 22, 2016

[Bioc-devel] msPurity build fail on Mac OS X (morelia)

11 msgs Sep 22

T

Thomas Lawson msPurity build fail on Mac OS X (morelia) Sep 20, 2016

M

Martin Morgan msPurity build fail on Mac OS X (morelia) Sep 21, 2016

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Thomas Lawson msPurity build fail on Mac OS X (morelia) Sep 21, 2016

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Dan Tenenbaum msPurity build fail on Mac OS X (morelia) Sep 21, 2016

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Kasper Daniel Hansen msPurity build fail on Mac OS X (morelia) Sep 21, 2016

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Thomas Lawson msPurity build fail on Mac OS X (morelia) Sep 22, 2016

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Laurent Gatto msPurity build fail on Mac OS X (morelia) Sep 22, 2016

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Kasper Daniel Hansen msPurity build fail on Mac OS X (morelia) Sep 22, 2016

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Laurent Gatto msPurity build fail on Mac OS X (morelia) Sep 22, 2016

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Thomas Lawson msPurity build fail on Mac OS X (morelia) Sep 22, 2016

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Laurent Gatto msPurity build fail on Mac OS X (morelia) Sep 22, 2016

[Bioc-devel] Updating author/maintainer info

3 msgs Sep 22

K

Kyle Dwayne Bemis Updating author/maintainer info Sep 21, 2016

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Hervé Pagès Updating author/maintainer info Sep 21, 2016

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Bemis, Kylie Updating author/maintainer info Sep 22, 2016

[Bioc-devel] Updating author/maintainer info

2 msgs Sep 21

B

Bemis, Kylie Updating author/maintainer info Sep 21, 2016

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Monther Alhamdoosh Updating author/maintainer info Sep 21, 2016

[Bioc-devel] New package deadline for this release: 26 September

2 msgs Sep 21

M

Martin Morgan New package deadline for this release: 26 September Sep 16, 2016

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Chen Hao New package deadline for this release: 26 September Sep 21, 2016

[Bioc-devel] lpsymphony - BiocParallel crash

2 msgs Sep 21

C

Christian Arnold lpsymphony - BiocParallel crash Sep 21, 2016

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Martin Morgan lpsymphony - BiocParallel crash Sep 21, 2016

[Bioc-devel] github mirror and svn out of sync

3 msgs Sep 21

R

Rainer Johannes github mirror and svn out of sync Sep 20, 2016

M

Martin Morgan github mirror and svn out of sync Sep 21, 2016

R

Rainer Johannes github mirror and svn out of sync Sep 21, 2016

[Bioc-devel] new biocView

1 msg Sep 21

S

Shepherd, Lori new biocView Sep 21, 2016

[Bioc-devel] there is no package called 'zlibbioc' on WINDOWS

2 msgs Sep 21

M

Moritz Gerstung there is no package called 'zlibbioc' on WINDOWS Sep 21, 2016

M

Martin Morgan there is no package called 'zlibbioc' on WINDOWS Sep 21, 2016

[Bioc-devel] "single cell" BiocViews

4 msgs Sep 20

M

Michael Love "single cell" BiocViews Sep 20, 2016

M

Martin Morgan "single cell" BiocViews Sep 20, 2016

M

Michael Love "single cell" BiocViews Sep 20, 2016

A

Aaron Lun "single cell" BiocViews Sep 20, 2016

[Bioc-devel] Code complexity survey

1 msg Sep 20

V

Vard Antinyan Code complexity survey Sep 20, 2016

[Bioc-devel] Problem of circular depedencies in package

1 msg Sep 19

H

Hervé Pagès Problem of circular depedencies in package Sep 19, 2016

[Bioc-devel] RankProd package update - dependency ‘Rmpfr’

2 msgs Sep 19

H

Hervé Pagès RankProd package update - dependency ‘Rmpfr’ Sep 19, 2016

F

Francesco Del Carratore RankProd package update - dependency ‘Rmpfr’ Sep 19, 2016

[Bioc-devel] Problem of circular depedencies in package

2 msgs Sep 19

D

DELABRIÈRE Alexis Problem of circular depedencies in package Sep 19, 2016

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Benilton Carvalho Problem of circular depedencies in package Sep 19, 2016

[Bioc-devel] RankProd package update - dependency ‘Rmpfr’

1 msg Sep 19

F

Francesco Del Carratore RankProd package update - dependency ‘Rmpfr’ Sep 19, 2016

[Bioc-devel] Missing vignette on my BioConductor page

4 msgs Sep 16

M

Marine Rohmer Missing vignette on my BioConductor page Sep 14, 2016

M

Martin Morgan Missing vignette on my BioConductor page Sep 14, 2016

M

Marine Rohmer Missing vignette on my BioConductor page Sep 16, 2016

M

Martin Morgan Missing vignette on my BioConductor page Sep 16, 2016

[Bioc-devel] How to update annotation packages

2 msgs Sep 16

R

Rainer Johannes How to update annotation packages Sep 16, 2016

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Obenchain, Valerie How to update annotation packages Sep 16, 2016

[Bioc-devel] NCBI http:// transitioning to https://

1 msg Sep 15

M

Martin Morgan NCBI http:// transitioning to https:// Sep 15, 2016

[Bioc-devel] R package with using rjava and java libraries exceeding the allowed size limit

2 msgs Sep 15

E

Eugenia Galeota R package with using rjava and java libraries exceeding the allowed size limit Sep 15, 2016

M

Martin Morgan R package with using rjava and java libraries exceeding the allowed size limit Sep 15, 2016

[Bioc-devel] Does Bioconductor update my DESCRIPTION automatically?

2 msgs Sep 14

T

Ted Wong Does Bioconductor update my DESCRIPTION automatically? Sep 14, 2016

O

Obenchain, Valerie Does Bioconductor update my DESCRIPTION automatically? Sep 14, 2016

[Bioc-devel] Why sleuth is not in Bioconductor?

3 msgs Sep 14

T

Ted Wong Why sleuth is not in Bioconductor? Sep 14, 2016

M

Martin Morgan Why sleuth is not in Bioconductor? Sep 14, 2016

D

Dario Strbenac Why sleuth is not in Bioconductor? Sep 14, 2016

[Bioc-devel] Why sleuth is not in Bioconductor?

2 msgs Sep 14

T

Ted Wong Why sleuth is not in Bioconductor? Sep 14, 2016

V

Vincent Carey Why sleuth is not in Bioconductor? Sep 14, 2016

[Bioc-devel] Bioconductor 3.4 release schedule

1 msg Sep 13

H

Hervé Pagès Bioconductor 3.4 release schedule Sep 13, 2016

[Bioc-devel] Merging two CharacterList objects doesn't work in Bioc-devel

2 msgs Sep 12

H

Hervé Pagès Merging two CharacterList objects doesn't work in Bioc-devel Sep 10, 2016

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Leonardo Collado Torres Merging two CharacterList objects doesn't work in Bioc-devel Sep 12, 2016

[Bioc-devel] moving packages

2 msgs Sep 12

H

Hervé Pagès moving packages Sep 6, 2016

A

Arunkumar Srinivasan moving packages Sep 12, 2016

[Bioc-devel] Merging two CharacterList objects doesn't work in Bioc-devel

1 msg Sep 8

L

Leonardo Collado Torres Merging two CharacterList objects doesn't work in Bioc-devel Sep 8, 2016

[Bioc-devel] Looking for info on how Bioconductor package developers negotiate breaking changes

1 msg Sep 7

C

Chris Bogart Looking for info on how Bioconductor package developers negotiate breaking changes Sep 7, 2016

[Bioc-devel] String Matching in Parallel

2 msgs Sep 6

D

Dario Strbenac String Matching in Parallel Sep 4, 2016

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Martin Morgan String Matching in Parallel Sep 6, 2016

[Bioc-devel] rhdf5::h5createFile() prints "Set libver lower bound to 18"

2 msgs Sep 5

A

Aaron Lun rhdf5::h5createFile() prints "Set libver lower bound to 18" Sep 5, 2016

F

Fischer, Bernd rhdf5::h5createFile() prints "Set libver lower bound to 18" Sep 5, 2016

[Bioc-devel] ctsGE new package for clustering time series data

1 msg Sep 5

M

michal sharabi ctsGE new package for clustering time series data Sep 5, 2016

[Bioc-devel] Trouble checking out svn with username and password

3 msgs Sep 3

D

Dan Tenenbaum Trouble checking out svn with username and password Sep 3, 2016

M

Martin Morgan Trouble checking out svn with username and password Sep 3, 2016

B

Brad Nelms Trouble checking out svn with username and password Sep 3, 2016

[Bioc-devel] New Bioconductor project

2 msgs Sep 3

T

Ted Wong New Bioconductor project Sep 3, 2016

M

Martin Morgan New Bioconductor project Sep 3, 2016

[Bioc-devel] Trouble checking out svn with username and password

1 msg Sep 3

B

Brad Nelms Trouble checking out svn with username and password Sep 3, 2016

[Bioc-devel] New Bioconductor project

2 msgs Sep 3

T

Ted Wong New Bioconductor project Sep 3, 2016

M

Martin Morgan New Bioconductor project Sep 3, 2016

[Bioc-devel] BStringSet Documentation

4 msgs Sep 2

D

Dario Strbenac BStringSet Documentation Sep 1, 2016

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Hervé Pagès BStringSet Documentation Sep 2, 2016

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Hervé Pagès BStringSet Documentation Sep 2, 2016

D

Dario Strbenac BStringSet Documentation Sep 2, 2016

[Bioc-devel] git mirror fails

2 msgs Sep 2

M

Martin Morgan git mirror fails Sep 1, 2016

M

Martin Morgan git mirror fails Sep 2, 2016