Bioc-devel - March 2018 - Thread View

[Bioc-devel] Workflows are now in git (and other Important workflow-related changes)

2 msgs Mar 31

Hervé Pagès Workflows are now in git (and other Important workflow-related changes) Mar 30, 2018

Wolfgang Huber Workflows are now in git (and other Important workflow-related changes) Mar 31, 2018

[Bioc-devel] Replacement for CytoscapeWindowClass from devel RCy3

1 msg Mar 30

Robert M. Flight Replacement for CytoscapeWindowClass from devel RCy3 Mar 30, 2018

[Bioc-devel] Replacement for CytoscapeWindowClass from devel RCy3

2 msgs Mar 30

Robert M. Flight Replacement for CytoscapeWindowClass from devel RCy3 Mar 30, 2018

Alex Pico Replacement for CytoscapeWindowClass from devel RCy3 Mar 30, 2018

[Bioc-devel] appveyor CI failing with biocparam

4 msgs Mar 30

Vivek Bhardwaj appveyor CI failing with biocparam Mar 29, 2018

Martin Morgan appveyor CI failing with biocparam Mar 29, 2018

Vivek Bhardwaj appveyor CI failing with biocparam Mar 29, 2018

Marcel Ramos appveyor CI failing with biocparam Mar 30, 2018

[Bioc-devel] Tensorflow support for bioconductor packages

7 msgs Mar 30

Kieran Campbell Tensorflow support for bioconductor packages Mar 28, 2018

Michael Lawrence Tensorflow support for bioconductor packages Mar 28, 2018

Hervé Pagès Tensorflow support for bioconductor packages Mar 28, 2018

Kieran Campbell Tensorflow support for bioconductor packages Mar 29, 2018

Michael Lawrence Tensorflow support for bioconductor packages Mar 29, 2018

Hervé Pagès Tensorflow support for bioconductor packages Mar 30, 2018

[Bioc-devel] Update data in data package, pcxnData

6 msgs Mar 30

Shepherd, Lori Update data in data package, pcxnData Mar 23, 2018

Sokratis Kariotis Update data in data package, pcxnData Mar 23, 2018

Turaga, Nitesh Update data in data package, pcxnData Mar 26, 2018

Sokratis Kariotis Update data in data package, pcxnData Mar 27, 2018

Sokratis Kariotis Update data in data package, pcxnData Mar 29, 2018

Shepherd, Lori Update data in data package, pcxnData Mar 30, 2018

[Bioc-devel] new package deadline? 4/2 or 4/9

4 msgs Mar 30

Paul Shannon new package deadline? 4/2 or 4/9 Mar 27, 2018

Obenchain, Valerie new package deadline? 4/2 or 4/9 Mar 27, 2018

Paul Shannon new package deadline? 4/2 or 4/9 Mar 29, 2018

Obenchain, Valerie new package deadline? 4/2 or 4/9 Mar 30, 2018

[Bioc-devel] vignette problems

4 msgs Mar 30

campos vignette problems Mar 27, 2018

Martin Morgan vignette problems Mar 27, 2018

campos vignette problems Mar 29, 2018

Martin Morgan vignette problems Mar 30, 2018

[Bioc-devel] Git upstream/access issues

4 msgs Mar 29

Kipper Fletez-Brant Git upstream/access issues Mar 27, 2018

Obenchain, Valerie Git upstream/access issues Mar 27, 2018

Kipper Fletez-Brant Git upstream/access issues Mar 27, 2018

Obenchain, Valerie Git upstream/access issues Mar 29, 2018

[Bioc-devel] GUIDEseq problems reported in the Multiple platform build/check report for BioC 3.6

2 msgs Mar 29

Turaga, Nitesh GUIDEseq problems reported in the Multiple platform build/check report for BioC 3.6 Mar 29, 2018

Zhu, Lihua (Julie) GUIDEseq problems reported in the Multiple platform build/check report for BioC 3.6 Mar 29, 2018

[Bioc-devel] Call for papers for Bioconductor F1000Research Gateway

1 msg Mar 29

Sean Davis Call for papers for Bioconductor F1000Research Gateway Mar 29, 2018

[Bioc-devel] How to access git repository as a new maintainer

2 msgs Mar 29

Hu, Zicheng How to access git repository as a new maintainer Mar 28, 2018

Shepherd, Lori How to access git repository as a new maintainer Mar 29, 2018

[Bioc-devel] FW: GUIDEseq problems reported in the Multiple platform build/check report for BioC 3.6

3 msgs Mar 29

Zhu, Lihua (Julie) GUIDEseq problems reported in the Multiple platform build/check report for BioC 3.6 Mar 28, 2018

Turaga, Nitesh GUIDEseq problems reported in the Multiple platform build/check report for BioC 3.6 Mar 29, 2018

Zhu, Lihua (Julie) GUIDEseq problems reported in the Multiple platform build/check report for BioC 3.6 Mar 29, 2018

[Bioc-devel] No Windows binary for GenomicRanges

3 msgs Mar 28

Gordon K Smyth No Windows binary for GenomicRanges Mar 18, 2018

Hervé Pagès No Windows binary for GenomicRanges Mar 19, 2018

Hervé Pagès No Windows binary for GenomicRanges Mar 28, 2018

[Bioc-devel] Moving Package from SVN to Git

2 msgs Mar 28

Tomasz Stokowy Moving Package from SVN to Git Mar 28, 2018

Turaga, Nitesh Moving Package from SVN to Git Mar 28, 2018

[Bioc-devel] hook declined or non-fast-forward problem

9 msgs Mar 28

Yuande Tan hook declined or non-fast-forward problem Mar 25, 2018

Turaga, Nitesh hook declined or non-fast-forward problem Mar 26, 2018

Hongxu Ding hook declined or non-fast-forward problem Mar 27, 2018

Martin Morgan hook declined or non-fast-forward problem Mar 28, 2018

Hongxu Ding hook declined or non-fast-forward problem Mar 28, 2018

Martin Morgan hook declined or non-fast-forward problem Mar 28, 2018

Hongxu Ding hook declined or non-fast-forward problem Mar 28, 2018

Martin Morgan hook declined or non-fast-forward problem Mar 28, 2018

Hongxu Ding hook declined or non-fast-forward problem Mar 28, 2018

[Bioc-devel] AnnotationHub (2)

3 msgs Mar 27

Kasper Daniel Hansen AnnotationHub (2) Mar 27, 2018

Shepherd, Lori AnnotationHub (2) Mar 27, 2018

Vincent Carey AnnotationHub (2) Mar 27, 2018

[Bioc-devel] git push complains non-existing files being too big

2 msgs Mar 27

Turaga, Nitesh git push complains non-existing files being too big Mar 27, 2018

Zhu, Lihua (Julie) git push complains non-existing files being too big Mar 27, 2018

[Bioc-devel] Support site RSS feeds

2 msgs Mar 27

Mike Smith Support site RSS feeds Mar 27, 2018

Martin Morgan Support site RSS feeds Mar 27, 2018

[Bioc-devel] Bioconductor 3.7 release: deadline for new packages

1 msg Mar 27

Obenchain, Valerie Bioconductor 3.7 release: deadline for new packages Mar 27, 2018

[Bioc-devel] Bioconductor 3.7 release schedule

1 msg Mar 27

Obenchain, Valerie Bioconductor 3.7 release schedule Mar 27, 2018

[Bioc-devel] VariantAnnotation: streaming over a genomic range

1 msg Mar 27

Robert Castelo VariantAnnotation: streaming over a genomic range Mar 27, 2018

[Bioc-devel] Help: git push complains non-existing files being too big

1 msg Mar 26

Zhu, Lihua (Julie) Help: git push complains non-existing files being too big Mar 26, 2018

[Bioc-devel] Updated Deprecated Package List for Bioc 3.7

1 msg Mar 26

Ludwig Geistlinger Updated Deprecated Package List for Bioc 3.7 Mar 26, 2018

[Bioc-devel] GUIDEseq problems reported in the Multiple platform build/check report for BioC 3.6

1 msg Mar 22

Zhu, Lihua (Julie) GUIDEseq problems reported in the Multiple platform build/check report for BioC 3.6 Mar 22, 2018

[Bioc-devel] Error during CHECK on Windows (tokay1)

5 msgs Mar 22

Matthias Döring Error during CHECK on Windows (tokay1) Mar 22, 2018

Hervé Pagès Error during CHECK on Windows (tokay1) Mar 22, 2018

Matthias Döring Error during CHECK on Windows (tokay1) Mar 22, 2018

Hervé Pagès Error during CHECK on Windows (tokay1) Mar 22, 2018

[Bioc-devel] Update existing packages and change name

2 msgs Mar 22

Sokratis Kariotis Update existing packages and change name Mar 22, 2018

Hervé Pagès Update existing packages and change name Mar 22, 2018

[Bioc-devel] [R-pkg-devel] DESCRIPTION file building problem

3 msgs Mar 21

Dario Righelli DESCRIPTION file building problem Mar 21, 2018

Gabriel Becker DESCRIPTION file building problem Mar 21, 2018

Marcel Ramos EXTERNAL: Re: [R-pkg-devel] DESCRIPTION file building problem Mar 21, 2018

[Bioc-devel] Help for Error "Maximal Number of DLLs reached..."

5 msgs Mar 21

Yuan Tian Help for Error "Maximal Number of DLLs reached..." Mar 21, 2018

Henrik Bengtsson Help for Error "Maximal Number of DLLs reached..." Mar 21, 2018

Martin Morgan Help for Error "Maximal Number of DLLs reached..." Mar 21, 2018

Hervé Pagès Help for Error "Maximal Number of DLLs reached..." Mar 21, 2018

Yuan Tian Help for Error "Maximal Number of DLLs reached..." Mar 21, 2018

[Bioc-devel] Question about Wercker continuous integration

5 msgs Mar 21

Kevin RUE Question about Wercker continuous integration Mar 16, 2018

Marcel Ramos EXTERNAL: Question about Wercker continuous integration Mar 20, 2018

Kevin RUE EXTERNAL: Question about Wercker continuous integration Mar 20, 2018

Marcel Ramos EXTERNAL: Question about Wercker continuous integration Mar 20, 2018

Kevin RUE EXTERNAL: Question about Wercker continuous integration Mar 21, 2018

[Bioc-devel] IGV - a new package in preparation

17 msgs Mar 20

Paul Shannon IGV - a new package in preparation Mar 7, 2018

Gabriel Becker IGV - a new package in preparation Mar 7, 2018

Paul Shannon IGV - a new package in preparation Mar 7, 2018

Levi Waldron IGV - a new package in preparation Mar 9, 2018

Paul Shannon IGV - a new package in preparation Mar 9, 2018

Michael Lawrence IGV - a new package in preparation Mar 9, 2018

Paul Shannon IGV - a new package in preparation Mar 9, 2018

Michael Lawrence IGV - a new package in preparation Mar 9, 2018

Cook, Malcolm IGV - a new package in preparation Mar 9, 2018

Michael Lawrence IGV - a new package in preparation Mar 9, 2018

Paul Shannon IGV VCF demo, other suggestions? [was Re: IGV - a new package in preparation] Mar 12, 2018

Michael Lawrence IGV VCF demo, other suggestions? [was Re: IGV - a new package in preparation] Mar 12, 2018

Paul Shannon IGV VCF demo, other suggestions? [was Re: IGV - a new package in preparation] Mar 14, 2018

Michael Lawrence IGV VCF demo, other suggestions? [was Re: IGV - a new package in preparation] Mar 14, 2018

Gabriel Becker IGV VCF demo, other suggestions? [was Re: IGV - a new package in preparation] Mar 14, 2018

Paul Shannon on to AnnotationTrack with rtracklayer [was Re: IGV VCF demo, other suggestions? [was Re: IGV - a new package in preparation]] Mar 20, 2018

[Bioc-devel] git push denied

5 msgs Mar 20

Laurent Gatto git push denied Mar 19, 2018

Turaga, Nitesh git push denied Mar 19, 2018

Laurent Gatto git push denied Mar 20, 2018

Turaga, Nitesh git push denied Mar 20, 2018

Laurent Gatto git push denied Mar 20, 2018

[Bioc-devel] deleting irrelevant legacy objects from git repo?

1 msg Mar 19

Turaga, Nitesh deleting irrelevant legacy objects from git repo? Mar 19, 2018

[Bioc-devel] amplican tokay2 i386 error

3 msgs Mar 19

Kornel Labun amplican tokay2 i386 error Mar 16, 2018

Marcel Ramos EXTERNAL: amplican tokay2 i386 error Mar 19, 2018

Martin Morgan EXTERNAL: amplican tokay2 i386 error Mar 19, 2018

[Bioc-devel] Applying changes to existing package

7 msgs Mar 19

Christian Oertlin Applying changes to existing package Mar 16, 2018

Sean Davis Applying changes to existing package Mar 16, 2018

Shepherd, Lori Applying changes to existing package Mar 16, 2018

Christian Oertlin Applying changes to existing package Mar 19, 2018

Martin Morgan Applying changes to existing package Mar 19, 2018

Christian Oertlin Applying changes to existing package Mar 19, 2018

Martin Morgan Applying changes to existing package Mar 19, 2018

[Bioc-devel] Best practice on commit

6 msgs Mar 16

Egon Willighagen Best practice on commit Mar 11, 2018

James W. MacDonald Best practice on commit Mar 11, 2018

Egon Willighagen Best practice on commit Mar 11, 2018

Tyler Smith Best practice on commit Mar 15, 2018

Hervé Pagès Best practice on commit Mar 15, 2018

Tyler Smith Best practice on commit Mar 16, 2018

[Bioc-devel] Fwd: Re: failing Biocondcutor package STAN

2 msgs Mar 16

campos failing Biocondcutor package STAN Mar 16, 2018

Turaga, Nitesh failing Biocondcutor package STAN Mar 16, 2018

[Bioc-devel] updating experiment data package MethylAidData

2 msgs Mar 16

Davy Cats updating experiment data package MethylAidData Mar 15, 2018

Shepherd, Lori updating experiment data package MethylAidData Mar 16, 2018

[Bioc-devel] mcols Function Not Found for Windows Build

2 msgs Mar 15

Dario Strbenac mcols Function Not Found for Windows Build Mar 15, 2018

Hervé Pagès mcols Function Not Found for Windows Build Mar 15, 2018

[Bioc-devel] SVN to GIT

13 msgs Mar 14

Servant Nicolas SVN to GIT Mar 6, 2018

Obenchain, Valerie SVN to GIT Mar 9, 2018

Servant Nicolas SVN to GIT Mar 9, 2018

Turaga, Nitesh SVN to GIT Mar 9, 2018

Servant Nicolas SVN to GIT Mar 9, 2018

Obenchain, Valerie SVN to GIT Mar 9, 2018

Servant Nicolas SVN to GIT Mar 9, 2018

Obenchain, Valerie SVN to GIT Mar 9, 2018

Servant Nicolas SVN to GIT Mar 13, 2018

Obenchain, Valerie SVN to GIT Mar 13, 2018

Turaga, Nitesh SVN to GIT Mar 13, 2018

Obenchain, Valerie SVN to GIT Mar 13, 2018

Servant Nicolas SVN to GIT Mar 14, 2018

[Bioc-devel] Bioc2018 Toronto: call for abstracts, workshop syllabi, special interest groups

1 msg Mar 14

Levi Waldron Bioc2018 Toronto: call for abstracts, workshop syllabi, special interest groups Mar 14, 2018

[Bioc-devel] Update existing packages and change name

1 msg Mar 13

Obenchain, Valerie Update existing packages and change name Mar 13, 2018

[Bioc-devel] Reset password

2 msgs Mar 13

Jose M Muino Reset password Mar 13, 2018

Obenchain, Valerie Reset password Mar 13, 2018

[Bioc-devel] adding an additional maintainer - roma

2 msgs Mar 12

Klara Kaleb adding an additional maintainer - roma Mar 12, 2018

Obenchain, Valerie adding an additional maintainer - roma Mar 12, 2018

[Bioc-devel] Update existing packages and change name

1 msg Mar 12

Obenchain, Valerie Update existing packages and change name Mar 12, 2018

[Bioc-devel] Daily build

2 msgs Mar 12

Obenchain, Valerie Daily build Mar 9, 2018

Shepherd, Lori Daily build Mar 12, 2018

[Bioc-devel] BiocCheck - warning: files are over 5MB

5 msgs Mar 10

Claris Baby BiocCheck - warning: files are over 5MB Mar 9, 2018

Pariksheet Nanda BiocCheck - warning: files are over 5MB Mar 10, 2018

Martin Morgan BiocCheck - warning: files are over 5MB Mar 10, 2018

Dario Strbenac BiocCheck - warning: files are over 5MB Mar 10, 2018

[Bioc-devel] Daily build

1 msg Mar 9

Obenchain, Valerie Daily build Mar 9, 2018

[Bioc-devel] List of Deprecated Packages for Bioc3.7

1 msg Mar 9

Shepherd, Lori List of Deprecated Packages for Bioc3.7 Mar 9, 2018

[Bioc-devel] Cleanup of Bioconductor organization on Github

2 msgs Mar 9

Turaga, Nitesh Cleanup of Bioconductor organization on Github Mar 7, 2018

Obenchain, Valerie Cleanup of Bioconductor organization on Github Mar 9, 2018

[Bioc-devel] Cleanup of Bioconductor organization on Github

5 msgs Mar 8

Keegan Korthauer Cleanup of Bioconductor organization on Github Mar 8, 2018

Obenchain, Valerie Cleanup of Bioconductor organization on Github Mar 8, 2018

Turaga, Nitesh Cleanup of Bioconductor organization on Github Mar 8, 2018

Keegan Korthauer Cleanup of Bioconductor organization on Github Mar 8, 2018

[Bioc-devel] Duplicate commits in mimager package

7 msgs Mar 7

Aaron Wolen Duplicate commits in mimager package Mar 6, 2018

Turaga, Nitesh Duplicate commits in mimager package Mar 6, 2018

Aaron Wolen Duplicate commits in mimager package Mar 6, 2018

Rainer Johannes Duplicate commits in mimager package Mar 6, 2018

Aaron Wolen Duplicate commits in mimager package Mar 7, 2018

Turaga, Nitesh Duplicate commits in mimager package Mar 7, 2018

Aaron Wolen Duplicate commits in mimager package Mar 7, 2018

[Bioc-devel] Daily build

2 msgs Mar 7

Nicolas Descostes Daily build Mar 7, 2018

Obenchain, Valerie Daily build Mar 7, 2018

[Bioc-devel] failing update Bioconductor package psygenet2r

5 msgs Mar 6

Obenchain, Valerie failing update Bioconductor package psygenet2r Mar 5, 2018

alba gutierrez failing update Bioconductor package psygenet2r Mar 5, 2018

alba gutierrez failing update Bioconductor package psygenet2r Mar 6, 2018

Obenchain, Valerie failing update Bioconductor package psygenet2r Mar 6, 2018

alba gutierrez failing update Bioconductor package psygenet2r Mar 6, 2018

[Bioc-devel] getuid, geteuid, gegid, getegid on mingw

2 msgs Mar 6

August Guang getuid, geteuid, gegid, getegid on mingw Mar 5, 2018

Martin Morgan getuid, geteuid, gegid, getegid on mingw Mar 6, 2018

[Bioc-devel] mzR version update required

2 msgs Mar 5

Murtaza Merchant mzR version update required Mar 5, 2018

Laurent Gatto mzR version update required Mar 5, 2018

[Bioc-devel] Single Package Builder temporarily down

2 msgs Mar 5

Shepherd, Lori Single Package Builder temporarily down Mar 3, 2018

Shepherd, Lori Single Package Builder temporarily down Mar 5, 2018

[Bioc-devel] Updated Deprecated Package List for Bioc 3.7

3 msgs Mar 4

Shepherd, Lori Updated Deprecated Package List for Bioc 3.7 Mar 3, 2018

Ludwig Geistlinger Updated Deprecated Package List for Bioc 3.7 Mar 3, 2018

Shepherd, Lori Updated Deprecated Package List for Bioc 3.7 Mar 4, 2018

[Bioc-devel] error while trying to run BiocCheck

2 msgs Mar 3

Claris Baby error while trying to run BiocCheck Mar 3, 2018

Martin Morgan error while trying to run BiocCheck Mar 3, 2018

[Bioc-devel] List of Deprecated Packages for Bioc3.7

1 msg Mar 2

Shepherd, Lori List of Deprecated Packages for Bioc3.7 Mar 2, 2018

[Bioc-devel] rhdf5 NA's in int32

1 msg Mar 2

Mike Smith rhdf5 NA's in int32 Mar 2, 2018

[Bioc-devel] Questions about tokay2 and import 'grDevices::windows' versus 'IRanges::windows'

3 msgs Mar 1

Martin, Tiphaine Questions about tokay2 and import 'grDevices::windows' versus 'IRanges::windows' Mar 1, 2018

Martin Morgan Questions about tokay2 and import 'grDevices::windows' versus 'IRanges::windows' Mar 1, 2018

Martin, Tiphaine Questions about tokay2 and import 'grDevices::windows' versus 'IRanges::windows' Mar 1, 2018

[Bioc-devel] Thanks to Andrzej...

3 msgs Mar 1

Kevin RUE Thanks to Andrzej... Mar 1, 2018

Michael Love Thanks to Andrzej... Mar 1, 2018

Turaga, Nitesh Thanks to Andrzej... Mar 1, 2018

[Bioc-devel] Access to package PGA

2 msgs Mar 1

Shawn Xu Access to package PGA Feb 28, 2018

Obenchain, Valerie Access to package PGA Mar 1, 2018

Bioc-devel March 2018