Bioc-devel December 2018

[Bioc-devel] how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed)

3 msgs Dec 31

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Lulu Chen how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed) Dec 31, 2018

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Martin Morgan how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed) Dec 31, 2018

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Lulu Chen how to achieve reproducibility with BiocParallel regardless of number of threads and OS (set.seed is disallowed) Dec 31, 2018

[Bioc-devel] Error in Bioc windows check report

1 msg Dec 31

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Benjamin Tremblay Error in Bioc windows check report Dec 31, 2018

[Bioc-devel] "index" option of filterVcf in VariantAnnotation package

2 msgs Dec 31

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Jialin Ma "index" option of filterVcf in VariantAnnotation package Dec 27, 2018

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Obenchain, Valerie "index" option of filterVcf in VariantAnnotation package Dec 31, 2018

[Bioc-devel] Request to un-deprecate a package

1 msg Dec 26

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Turaga, Nitesh Request to un-deprecate a package Dec 26, 2018

[Bioc-devel] Pushing to upstream master

8 msgs Dec 26

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Anand MT Pushing to upstream master Dec 17, 2018

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Turaga, Nitesh Pushing to upstream master Dec 17, 2018

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Anand MT Pushing to upstream master Dec 17, 2018

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Turaga, Nitesh Pushing to upstream master Dec 17, 2018

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Anand MT Pushing to upstream master Dec 18, 2018

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Turaga, Nitesh Pushing to upstream master Dec 18, 2018

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Turaga, Nitesh Pushing to upstream master Dec 26, 2018

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Anand MT Pushing to upstream master Dec 26, 2018

[Bioc-devel] Controlling vignette compilation order

13 msgs Dec 24

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Aaron Lun Controlling vignette compilation order Dec 18, 2018

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Michael Lawrence Controlling vignette compilation order Dec 18, 2018

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Martin Morgan Controlling vignette compilation order Dec 18, 2018

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Aaron Lun Controlling vignette compilation order Dec 18, 2018

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Hervé Pagès Controlling vignette compilation order Dec 18, 2018

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Michael Lawrence Controlling vignette compilation order Dec 18, 2018

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Aaron Lun Controlling vignette compilation order Dec 21, 2018

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Michael Lawrence Controlling vignette compilation order Dec 22, 2018

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Martin Morgan Controlling vignette compilation order Dec 22, 2018

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Henrik Bengtsson Controlling vignette compilation order Dec 22, 2018

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Aaron Lun Controlling vignette compilation order Dec 22, 2018

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Aaron Lun Controlling vignette compilation order Dec 22, 2018

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Aaron Lun Controlling vignette compilation order Dec 24, 2018

[Bioc-devel] New ExperimentHub resource and some related questions

2 msgs Dec 23

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Lu, Dongyi (Lambda) New ExperimentHub resource and some related questions Dec 21, 2018

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Martin Morgan New ExperimentHub resource and some related questions Dec 23, 2018

[Bioc-devel] Aliasing `]` breaks BiocCheck::BiocCheck() version 1.18.0

8 msgs Dec 22

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Shian Su Aliasing `]` breaks BiocCheck::BiocCheck() version 1.18.0 Dec 17, 2018

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Shepherd, Lori Aliasing `]` breaks BiocCheck::BiocCheck() version 1.18.0 Dec 18, 2018

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Luke Tierney Aliasing `]` breaks BiocCheck::BiocCheck() version 1.18.0 Dec 18, 2018

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Luke Tierney Aliasing `]` breaks BiocCheck::BiocCheck() version 1.18.0 Dec 19, 2018

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Martin Morgan Aliasing `]` breaks BiocCheck::BiocCheck() version 1.18.0 Dec 20, 2018

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Luke Tierney Aliasing `]` breaks BiocCheck::BiocCheck() version 1.18.0 Dec 20, 2018

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Luke Tierney Aliasing `]` breaks BiocCheck::BiocCheck() version 1.18.0 Dec 22, 2018

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Martin Morgan Aliasing `]` breaks BiocCheck::BiocCheck() version 1.18.0 Dec 22, 2018

[Bioc-devel] Compilation flags, CHECK errors and BiocNeighbors

8 msgs Dec 21

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Aaron Lun Compilation flags, CHECK errors and BiocNeighbors Dec 15, 2018

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Kasper Daniel Hansen Compilation flags, CHECK errors and BiocNeighbors Dec 16, 2018

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Obenchain, Valerie Compilation flags, CHECK errors and BiocNeighbors Dec 17, 2018

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Aaron Lun Compilation flags, CHECK errors and BiocNeighbors Dec 17, 2018

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Shian Su Compilation flags, CHECK errors and BiocNeighbors Dec 17, 2018

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Obenchain, Valerie Compilation flags, CHECK errors and BiocNeighbors Dec 18, 2018

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Obenchain, Valerie Compilation flags, CHECK errors and BiocNeighbors Dec 20, 2018

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Aaron Lun Compilation flags, CHECK errors and BiocNeighbors Dec 21, 2018

[Bioc-devel] New ExperimentHub resource and some related questions

3 msgs Dec 20

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Lu, Dongyi (Lambda) New ExperimentHub resource and some related questions Dec 19, 2018

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Aaron Lun New ExperimentHub resource and some related questions Dec 20, 2018

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Shepherd, Lori New ExperimentHub resource and some related questions Dec 20, 2018

[Bioc-devel] Additional developer

4 msgs Dec 19

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Thomas Girke Additional developer Dec 17, 2018

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Turaga, Nitesh Additional developer Dec 19, 2018

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Thomas Girke Additional developer Dec 19, 2018

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Daniela Cassol Additional developer Dec 19, 2018

[Bioc-devel] NEWS not updated on devel site

3 msgs Dec 19

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Kristoffer Vitting-Seerup NEWS not updated on devel site Dec 14, 2018

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Shepherd, Lori NEWS not updated on devel site Dec 14, 2018

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Obenchain, Valerie NEWS not updated on devel site Dec 19, 2018

[Bioc-devel] Cairo Error on MacOS on Bioc 3.9

3 msgs Dec 18

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Christian Mertes Cairo Error on MacOS on Bioc 3.9 Dec 14, 2018

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Obenchain, Valerie Cairo Error on MacOS on Bioc 3.9 Dec 17, 2018

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Christian Mertes Cairo Error on MacOS on Bioc 3.9 Dec 18, 2018

[Bioc-devel] failling to build vignette

3 msgs Dec 17

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Martin, Tiphaine failling to build vignette Dec 17, 2018

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Shepherd, Lori failling to build vignette Dec 17, 2018

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Martin, Tiphaine failling to build vignette Dec 17, 2018

[Bioc-devel] BioC 3.9 devel builds

3 msgs Dec 17

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Obenchain, Valerie BioC 3.9 devel builds Dec 17, 2018

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Michael Lawrence BioC 3.9 devel builds Dec 17, 2018

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Hervé Pagès BioC 3.9 devel builds Dec 17, 2018

[Bioc-devel] Giving Write Access

2 msgs Dec 17

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michael zon Giving Write Access Dec 17, 2018

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Turaga, Nitesh Giving Write Access Dec 17, 2018

[Bioc-devel] Undefined slot classes warning

2 msgs Dec 17

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Vladimir Kiselev Undefined slot classes warning Dec 17, 2018

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Martin Morgan Undefined slot classes warning Dec 17, 2018

[Bioc-devel] ClassifyR Check Error on Linux and MacOS Systems

4 msgs Dec 17

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Dario Strbenac ClassifyR Check Error on Linux and MacOS Systems Dec 6, 2018

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Shepherd, Lori ClassifyR Check Error on Linux and MacOS Systems Dec 12, 2018

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Dario Strbenac ClassifyR Check Error on Linux and MacOS Systems Dec 17, 2018

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Shepherd, Lori ClassifyR Check Error on Linux and MacOS Systems Dec 17, 2018

[Bioc-devel] adding package maintainers

9 msgs Dec 13

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He, Liye adding package maintainers Dec 4, 2018

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Turaga, Nitesh adding package maintainers Dec 4, 2018

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He, Liye adding package maintainers Dec 12, 2018

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Turaga, Nitesh adding package maintainers Dec 12, 2018

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He, Liye adding package maintainers Dec 13, 2018

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Turaga, Nitesh adding package maintainers Dec 13, 2018

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Tang, Jing adding package maintainers Dec 13, 2018

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Turaga, Nitesh adding package maintainers Dec 13, 2018

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Tang, Jing adding package maintainers Dec 13, 2018

[Bioc-devel] rsvg missing on merida2

2 msgs Dec 12

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Kevin Horan rsvg missing on merida2 Dec 12, 2018

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Shepherd, Lori rsvg missing on merida2 Dec 12, 2018

[Bioc-devel] Dependencies of ggraph or ggimage

3 msgs Dec 11

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露崎 弘毅 Dependencies of ggraph or ggimage Dec 10, 2018

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Shepherd, Lori Dependencies of ggraph or ggimage Dec 11, 2018

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露崎 弘毅 Dependencies of ggraph or ggimage Dec 11, 2018

[Bioc-devel] Failing Bioconductor Package r3Cseq

1 msg Dec 11

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Supat Thongjuea Failing Bioconductor Package r3Cseq Dec 11, 2018

[Bioc-devel] GenomicFeatures export request

1 msg Dec 5

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Leonardo Collado Torres GenomicFeatures export request Dec 5, 2018

[Bioc-devel] GenomicFeatures export request

1 msg Dec 5

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Hervé Pagès GenomicFeatures export request Dec 5, 2018

[Bioc-devel] email changed, can't access to my bioconductor package

2 msgs Dec 5

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Yafeng Zhu email changed, can't access to my bioconductor package Dec 4, 2018

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Turaga, Nitesh email changed, can't access to my bioconductor package Dec 5, 2018

[Bioc-devel] New package submission tracker

1 msg Dec 4

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Shepherd, Lori New package submission tracker Dec 4, 2018

[Bioc-devel] Invitation: 01.-03.04.2019 de.NBI CompMS metaRbolomics Hackathon

1 msg Dec 4

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Neumann, Steffen Invitation: 01.-03.04.2019 de.NBI CompMS metaRbolomics Hackathon Dec 4, 2018

[Bioc-devel] SummarizedExperiment warning upon loading

4 msgs Dec 3

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Lan Huong Nguyen SummarizedExperiment warning upon loading Dec 1, 2018

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Martin Morgan SummarizedExperiment warning upon loading Dec 2, 2018

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Lan Huong Nguyen SummarizedExperiment warning upon loading Dec 3, 2018

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Martin Morgan SummarizedExperiment warning upon loading Dec 3, 2018