Bioc-devel - January 2020 - Thread View

[Bioc-devel] Use of SummerisedExperiments or MultiAssayExperiments of many many Dataframes/ nested List objects

2 msgs Jan 31

Krutik Patel (PGR) Use of SummerisedExperiments or MultiAssayExperiments of many many Dataframes/ nested List objects Jan 31, 2020

James W. MacDonald Use of SummerisedExperiments or MultiAssayExperiments of many many Dataframes/ nested List objects Jan 31, 2020

[Bioc-devel] Version when submitting to Bioconductor

3 msgs Jan 31

Roman Hillje Version when submitting to Bioconductor Jan 30, 2020

Shepherd, Lori Version when submitting to Bioconductor Jan 31, 2020

Roman Hillje Version when submitting to Bioconductor Jan 31, 2020

[Bioc-devel] activation of account

1 msg Jan 30

Mattthias Erwin Futschik activation of account Jan 30, 2020

[Bioc-devel] How to speed up GRange comparision

14 msgs Jan 30

web working How to speed up GRange comparision Jan 29, 2020

Michael Lawrence How to speed up GRange comparision Jan 29, 2020

Jianhong Ou, Ph.D. How to speed up GRange comparision Jan 29, 2020

Hervé Pagès How to speed up GRange comparision Jan 29, 2020

Jianhong Ou, Ph.D. How to speed up GRange comparision Jan 29, 2020

Hervé Pagès How to speed up GRange comparision Jan 29, 2020

web working How to speed up GRange comparision Jan 29, 2020

Hervé Pagès How to speed up GRange comparision Jan 30, 2020

Michael Lawrence How to speed up GRange comparision Jan 30, 2020

Hervé Pagès How to speed up GRange comparision Jan 30, 2020

Michael Lawrence How to speed up GRange comparision Jan 30, 2020

Hervé Pagès How to speed up GRange comparision Jan 30, 2020

[Bioc-devel] New SE or new assay in SE?

3 msgs Jan 29

Laurent Gatto New SE or new assay in SE? Jan 28, 2020

Hervé Pagès New SE or new assay in SE? Jan 29, 2020

[Bioc-devel] Problems on BiocCredentials account_activation

2 msgs Jan 29

Danrley Fernandes Problems on BiocCredentials account_activation Jan 28, 2020

Turaga, Nitesh Problems on BiocCredentials account_activation Jan 29, 2020

[Bioc-devel] Still unable to access git bioconductor credentials

2 msgs Jan 29

Richard Virgen-Slane Still unable to access git bioconductor credentials Jan 29, 2020

Turaga, Nitesh Still unable to access git bioconductor credentials Jan 29, 2020

[Bioc-devel] [WARNING: UNSCANNABLE EXTRACTION FAILED]Re: Bioconductor package sagenhaft

1 msg Jan 29

Tim Beissbarth Bioconductor package sagenhaft Jan 29, 2020

[Bioc-devel] [WARNING: UNSCANNABLE EXTRACTION FAILED]Re: Bioconductor package sagenhaft

3 msgs Jan 29

Tim Beissbarth Bioconductor package sagenhaft Jan 24, 2020

Turaga, Nitesh Bioconductor package sagenhaft Jan 24, 2020

Shepherd, Lori Bioconductor package sagenhaft Jan 29, 2020

[Bioc-devel] Updating R-devel on Bioconductor builders

2 msgs Jan 29

Shepherd, Lori Updating R-devel on Bioconductor builders Jan 28, 2020

Shepherd, Lori Updating R-devel on Bioconductor builders Jan 29, 2020

[Bioc-devel] Python package dependency loading problem on malbec1 builder

1 msg Jan 28

Hervé Pagès Python package dependency loading problem on malbec1 builder Jan 28, 2020

[Bioc-devel] New SE or new assay in SE?

1 msg Jan 28

Tim Triche, Jr. New SE or new assay in SE? Jan 28, 2020

[Bioc-devel] Bioconductor is Hiring!

4 msgs Jan 27

Shepherd, Lori Bioconductor is Hiring! Jan 27, 2020

Arman Shahrisa Bioconductor is Hiring! Jan 27, 2020

Shepherd, Lori Bioconductor is Hiring! Jan 27, 2020

Peter Langfelder Bioconductor is Hiring! Jan 27, 2020

[Bioc-devel] trouble with BiocCredentials account_activation

2 msgs Jan 27

Zach Shao trouble with BiocCredentials account_activation Jan 25, 2020

Turaga, Nitesh trouble with BiocCredentials account_activation Jan 27, 2020

[Bioc-devel] tokay2 vignette ERROR Invalid UTF-8

1 msg Jan 27

Shepherd, Lori tokay2 vignette ERROR Invalid UTF-8 Jan 27, 2020

[Bioc-devel] Bioc2020 Registration Open - Call for abstracts workshops/talks/posters Open

1 msg Jan 27

Shepherd, Lori Bioc2020 Registration Open - Call for abstracts workshops/talks/posters Open Jan 27, 2020

[Bioc-devel] Rhtslib-linked package not compiling on Windows

3 msgs Jan 26

Lucas Nell Rhtslib-linked package not compiling on Windows Jan 20, 2020

Hervé Pagès Rhtslib-linked package not compiling on Windows Jan 21, 2020

Lucas Nell Rhtslib-linked package not compiling on Windows Jan 26, 2020

[Bioc-devel] TensorFlow installations

3 msgs Jan 24

Simon Dirmeier TensorFlow installations Jan 23, 2020

Shepherd, Lori TensorFlow installations Jan 23, 2020

Simon Dirmeier TensorFlow installations Jan 24, 2020

[Bioc-devel] New setting on devel builders will cause some new package failures

2 msgs Jan 24

Shepherd, Lori New setting on devel builders will cause some new package failures Jan 24, 2020

Henrik Bengtsson New setting on devel builders will cause some new package failures Jan 24, 2020

[Bioc-devel] [WARNING: UNSCANNABLE EXTRACTION FAILED]Re: Bioconductor package sagenhaft

2 msgs Jan 24

Tim Beissbarth Bioconductor package sagenhaft Jan 24, 2020

Turaga, Nitesh Bioconductor package sagenhaft Jan 24, 2020

[Bioc-devel] Problem with uncompressing files on tokay1?

2 msgs Jan 24

Nicolas Delhomme Problem with uncompressing files on tokay1? Jan 20, 2020

Shepherd, Lori Problem with uncompressing files on tokay1? Jan 24, 2020

[Bioc-devel] DeMixT issue

5 msgs Jan 24

py11 DeMixT issue Jan 20, 2020

Shepherd, Lori DeMixT issue Jan 21, 2020

py11 DeMixT issue Jan 23, 2020

Martin Morgan DeMixT issue Jan 24, 2020

[Bioc-devel] New bioconductor_docker image officially released

2 msgs Jan 23

Turaga, Nitesh New bioconductor_docker image officially released Jan 21, 2020

Felix Ernst New bioconductor_docker image officially released Jan 23, 2020

[Bioc-devel] Bioconductor Developers Forum - Thursday 23rd January

2 msgs Jan 23

Mike Smith Bioconductor Developers Forum - Thursday 23rd January Jan 20, 2020

Mike Smith Bioconductor Developers Forum - Thursday 23rd January Jan 23, 2020

[Bioc-devel] Help git package maintaining

7 msgs Jan 22

Raphael Bonnet Help git package maintaining Jan 22, 2020

Turaga, Nitesh Help git package maintaining Jan 22, 2020

Raphael Bonnet Help git package maintaining Jan 22, 2020

Turaga, Nitesh Help git package maintaining Jan 22, 2020

Raphael Bonnet Help git package maintaining Jan 22, 2020

Turaga, Nitesh Help git package maintaining Jan 22, 2020

Raphael Bonnet Help git package maintaining Jan 22, 2020

[Bioc-devel] Error unable to find image

6 msgs Jan 22

Zach Shao Error unable to find image Jan 19, 2020

Martin Morgan Error unable to find image Jan 20, 2020

Leonardo Collado Torres Error unable to find image Jan 21, 2020

Shepherd, Lori Error unable to find image Jan 21, 2020

Leonardo Collado Torres Error unable to find image Jan 21, 2020

Shepherd, Lori Error unable to find image Jan 22, 2020

[Bioc-devel] Error: Bioconductor Git Credentials

2 msgs Jan 21

Richard Virgen-Slane Error: Bioconductor Git Credentials Jan 21, 2020

Turaga, Nitesh Error: Bioconductor Git Credentials Jan 21, 2020

[Bioc-devel] Devel Build Report

1 msg Jan 21

Shepherd, Lori Devel Build Report Jan 21, 2020

[Bioc-devel] DEWSeq: Multiple platform build failures

3 msgs Jan 21

Biohentze DEWSeq: Multiple platform build failures Jan 20, 2020

Shepherd, Lori DEWSeq: Multiple platform build failures Jan 21, 2020

Biohentze DEWSeq: Multiple platform build failures Jan 21, 2020

[Bioc-devel] DeMixT issue

1 msg Jan 18

py11 DeMixT issue Jan 18, 2020

[Bioc-devel] Whats the timeframe for Bioc Support updates and downtime?

4 msgs Jan 17

Gordon K Smyth Whats the timeframe for Bioc Support updates and downtime? Jan 16, 2020

Shepherd, Lori Whats the timeframe for Bioc Support updates and downtime? Jan 17, 2020

Dario Strbenac Whats the timeframe for Bioc Support updates and downtime? Jan 17, 2020

Martin Morgan Whats the timeframe for Bioc Support updates and downtime? Jan 17, 2020

[Bioc-devel] How to use RData files in Bioconductor data and software packages

7 msgs Jan 16

web working How to use RData files in Bioconductor data and software packages Jan 9, 2020

Hervé Pagès How to use RData files in Bioconductor data and software packages Jan 9, 2020

web working How to use RData files in Bioconductor data and software packages Jan 9, 2020

Hervé Pagès How to use RData files in Bioconductor data and software packages Jan 9, 2020

Kasper Daniel Hansen How to use RData files in Bioconductor data and software packages Jan 14, 2020

web working How to use RData files in Bioconductor data and software packages Jan 16, 2020

[Bioc-devel] DeMixT issue

3 msgs Jan 15

py11 DeMixT issue Jan 15, 2020

Turaga, Nitesh DeMixT issue Jan 15, 2020

py11 DeMixT issue Jan 15, 2020

[Bioc-devel] Bioconductor Image deprecation 2 day notice for bioc_docker and bioconductor_full

1 msg Jan 15

Turaga, Nitesh Bioconductor Image deprecation 2 day notice for bioc_docker and bioconductor_full Jan 15, 2020

[Bioc-devel] Bug fix issue package MACSquantifyR

1 msg Jan 15

Turaga, Nitesh Bug fix issue package MACSquantifyR Jan 15, 2020

[Bioc-devel] Question about github repo

2 msgs Jan 14

Krutik Patel (PGR) Question about github repo Jan 14, 2020

Andris Jankevics Question about github repo Jan 14, 2020

[Bioc-devel] Change maintainer mail

3 msgs Jan 13

Juan Cruz Rodriguez Change maintainer mail Jan 7, 2020

Shepherd, Lori Change maintainer mail Jan 7, 2020

Juan Cruz Rodriguez Change maintainer mail Jan 13, 2020

[Bioc-devel] updated package but the Multiple platform for BioC 3.11 is still using the previous one

3 msgs Jan 12

Paola Rancoita updated package but the Multiple platform for BioC 3.11 is still using the previous one Jan 11, 2020

Martin Morgan updated package but the Multiple platform for BioC 3.11 is still using the previous one Jan 11, 2020

Paola Rancoita updated package but the Multiple platform for BioC 3.11 is still using the previous one Jan 12, 2020

[Bioc-devel] Deprecation of bioc_docker and bioconductor_full containers

1 msg Jan 9

Turaga, Nitesh Deprecation of bioc_docker and bioconductor_full containers Jan 9, 2020

[Bioc-devel] How to use RData files in Bioconductor data and software packages

1 msg Jan 9

web working How to use RData files in Bioconductor data and software packages Jan 9, 2020

[Bioc-devel] Problem in activating the Account for Bioconductor Git Credentials

3 msgs Jan 8

Paola Rancoita Problem in activating the Account for Bioconductor Git Credentials Jan 8, 2020

Turaga, Nitesh Problem in activating the Account for Bioconductor Git Credentials Jan 8, 2020

Paola Rancoita Problem in activating the Account for Bioconductor Git Credentials Jan 8, 2020

[Bioc-devel] TIMEOUT error in building vignette in package scruff

3 msgs Jan 8

Wang, Zhe TIMEOUT error in building vignette in package scruff Jan 8, 2020

Hervé Pagès TIMEOUT error in building vignette in package scruff Jan 8, 2020

[Bioc-devel] Warning: 'rgl_init' failed

2 msgs Jan 8

Fernando Pérez Sanz Warning: 'rgl_init' failed Jan 7, 2020

Hervé Pagès Warning: 'rgl_init' failed Jan 8, 2020

[Bioc-devel] Updating for 3.11

1 msg Jan 8

McDavid, Andrew Updating for 3.11 Jan 8, 2020

[Bioc-devel] Request R code this paper

3 msgs Jan 7

Salwa El-Aty Request R code this paper Jan 6, 2020

Joris Meys Request R code this paper Jan 7, 2020

Leonardo Collado Torres Request R code this paper Jan 7, 2020

[Bioc-devel] Updating for 3.11

5 msgs Jan 7

Karl Stamm Updating for 3.11 Jan 7, 2020

Michael Love Updating for 3.11 Jan 7, 2020

Martin Morgan Updating for 3.11 Jan 7, 2020

Michael Love Updating for 3.11 Jan 7, 2020

Hervé Pagès Updating for 3.11 Jan 7, 2020

[Bioc-devel] Cannot reproduce build error

2 msgs Jan 7

José Antonio Cannot reproduce build error Jan 7, 2020

Hervé Pagès Cannot reproduce build error Jan 7, 2020

[Bioc-devel] weird unit test error

2 msgs Jan 6

Yue Zhao (Jason) weird unit test error Jan 6, 2020

Martin Morgan weird unit test error Jan 6, 2020

[Bioc-devel] missing package name tags on support site

4 msgs Jan 6

Stephanie Gogarten missing package name tags on support site Jan 6, 2020

Shepherd, Lori missing package name tags on support site Jan 6, 2020

Stephanie Gogarten missing package name tags on support site Jan 6, 2020

[Bioc-devel] List of Deprecated Packages Bioc 3.11

1 msg Jan 6

Shepherd, Lori List of Deprecated Packages Bioc 3.11 Jan 6, 2020

[Bioc-devel] Annotation for Lactuca sativa (Lettuce)

4 msgs Jan 6

Camila Alves Annotation for Lactuca sativa (Lettuce) Jan 5, 2020

Vincent Carey Annotation for Lactuca sativa (Lettuce) Jan 6, 2020

James W. MacDonald Annotation for Lactuca sativa (Lettuce) Jan 6, 2020

Camila Alves Annotation for Lactuca sativa (Lettuce) Jan 6, 2020

[Bioc-devel] Final List of Deprecated Packages for Bioc3.10

2 msgs Jan 6

Ludwig Geistlinger Final List of Deprecated Packages for Bioc3.10 Jan 2, 2020

Shepherd, Lori Final List of Deprecated Packages for Bioc3.10 Jan 6, 2020

[Bioc-devel] request R CODESof paper which title "Generalized endpoint -inflated binomial modole

1 msg Jan 6

Salwa El-Aty request R CODESof paper which title "Generalized endpoint -inflated binomial modole Jan 6, 2020

[Bioc-devel] A query about fixing bugs via github

3 msgs Jan 5

Tang, Wenhao A query about fixing bugs via github Jan 5, 2020

Tang, Wenhao 回复: A query about fixing bugs via github Jan 5, 2020

Vincent Carey A query about fixing bugs via github Jan 5, 2020

[Bioc-devel] bsapply and vcountPattern: sapply -> bplapply

1 msg Jan 2

Bhagwat, Aditya bsapply and vcountPattern: sapply -> bplapply Jan 2, 2020

[Bioc-devel] Help with merida1 R CMD install error

3 msgs Jan 1

Benjamin Jean-Marie Tremblay Help with merida1 R CMD install error Jan 1, 2020

Martin Morgan Help with merida1 R CMD install error Jan 1, 2020

Benjamin Jean-Marie Tremblay Help with merida1 R CMD install error Jan 1, 2020

Bioc-devel January 2020