Bioc-devel February 2020

[Bioc-devel] Duplicated commits in BioC git repository

3 msgs Feb 29

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Mingxiang Teng Duplicated commits in BioC git repository Feb 28, 2020

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Turaga, Nitesh Duplicated commits in BioC git repository Feb 29, 2020

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Mingxiang Teng Duplicated commits in BioC git repository Feb 29, 2020

[Bioc-devel] issue: maintainer of a Bioconductor package

1 msg Feb 29

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OLIVIER FRANCOIS issue: maintainer of a Bioconductor package Feb 29, 2020

[Bioc-devel] Account activation problems

2 msgs Feb 28

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Antti Honkela Account activation problems Feb 27, 2020

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Turaga, Nitesh Account activation problems Feb 28, 2020

[Bioc-devel] Build report has not been received yet

2 msgs Feb 28

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Krutik Patel (PGR) Build report has not been received yet Feb 28, 2020

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Shepherd, Lori Build report has not been received yet Feb 28, 2020

[Bioc-devel] RcppAnnoy changed in CRAN from 0.0.14 to 0.0.15, and might have broken some packages

3 msgs Feb 27

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Leonardo Collado Torres RcppAnnoy changed in CRAN from 0.0.14 to 0.0.15, and might have broken some packages Feb 27, 2020

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Martin Morgan RcppAnnoy changed in CRAN from 0.0.14 to 0.0.15, and might have broken some packages Feb 27, 2020

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Aaron Lun RcppAnnoy changed in CRAN from 0.0.14 to 0.0.15, and might have broken some packages Feb 27, 2020

[Bioc-devel] List of Deprecated Packages Bioc 3.11

4 msgs Feb 27

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Shepherd, Lori List of Deprecated Packages Bioc 3.11 Feb 27, 2020

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Ludwig Geistlinger List of Deprecated Packages Bioc 3.11 Feb 27, 2020

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Interdonato, Kayla EXTERNAL: Re: List of Deprecated Packages Bioc 3.11 Feb 27, 2020

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Ludwig Geistlinger EXTERNAL: Re: List of Deprecated Packages Bioc 3.11 Feb 27, 2020

[Bioc-devel] Change citation reference

4 msgs Feb 27

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Federico Giorgi Change citation reference Feb 27, 2020

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Shepherd, Lori Change citation reference Feb 27, 2020

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Stian Lågstad Change citation reference Feb 27, 2020

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Federico Giorgi Change citation reference Feb 27, 2020

[Bioc-devel] Fwd: Changing the maintanor of IMMAN package

1 msg Feb 27

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Turaga, Nitesh Changing the maintanor of IMMAN package Feb 27, 2020

[Bioc-devel] update package

2 msgs Feb 27

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Minoo Ashtiani update package Feb 27, 2020

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Shepherd, Lori update package Feb 27, 2020

[Bioc-devel] Bioc2020 - One week left to submit proposals for workshops/talks/posters

1 msg Feb 25

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Shepherd, Lori Bioc2020 - One week left to submit proposals for workshops/talks/posters Feb 25, 2020

[Bioc-devel] R CMD build error for 3.10 (but not 3.11)

4 msgs Feb 25

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L Rutter R CMD build error for 3.10 (but not 3.11) Feb 1, 2020

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Shepherd, Lori R CMD build error for 3.10 (but not 3.11) Feb 3, 2020

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L Rutter R CMD build error for 3.10 (but not 3.11) Feb 24, 2020

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Shepherd, Lori R CMD build error for 3.10 (but not 3.11) Feb 25, 2020

[Bioc-devel] Deleting netDx.examples package from BioC

5 msgs Feb 24

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Shraddha Pai Deleting netDx.examples package from BioC Feb 21, 2020

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Martin Morgan Deleting netDx.examples package from BioC Feb 22, 2020

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Shraddha Pai Deleting netDx.examples package from BioC Feb 24, 2020

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Martin Morgan Deleting netDx.examples package from BioC Feb 24, 2020

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Shraddha Pai Deleting netDx.examples package from BioC Feb 24, 2020

[Bioc-devel] atSNP graphic error on malbec1 and malbec2

1 msg Feb 24

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Shin, Sunyoung atSNP graphic error on malbec1 and malbec2 Feb 24, 2020

[Bioc-devel] Biostrings: unicode characters

1 msg Feb 24

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Ulrich Bodenhofer Biostrings: unicode characters Feb 24, 2020

[Bioc-devel] DESeq2 use of assays<-, fixed in v1.27.26

1 msg Feb 20

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Michael Love DESeq2 use of assays<-, fixed in v1.27.26 Feb 20, 2020

[Bioc-devel] Bioconductor Developers Forum - Thursday 20th February

2 msgs Feb 20

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Mike Smith Bioconductor Developers Forum - Thursday 20th February Feb 17, 2020

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Mike Smith Bioconductor Developers Forum - Thursday 20th February Feb 20, 2020

[Bioc-devel] "git push upstream master" does not work

5 msgs Feb 18

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Shin, Sunyoung "git push upstream master" does not work Feb 16, 2020

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Neumann, Steffen "git push upstream master" does not work Feb 16, 2020

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Shin, Sunyoung "git push upstream master" does not work Feb 16, 2020

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Neumann, Steffen "git push upstream master" does not work Feb 16, 2020

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Shin, Sunyoung plotMotifLogo function of motifStack package generates an empty plot Feb 18, 2020

[Bioc-devel] Question about passphrase for SSH key

2 msgs Feb 18

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Xu Ren Question about passphrase for SSH key Feb 18, 2020

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Xu Ren Question about passphrase for SSH key Feb 18, 2020

[Bioc-devel] Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks!

1 msg Feb 18

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Shepherd, Lori Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks! Feb 18, 2020

[Bioc-devel] Changing the name of your package while it has been submitted

5 msgs Feb 18

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Krutik Patel (PGR) Changing the name of your package while it has been submitted Feb 17, 2020

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Shepherd, Lori Changing the name of your package while it has been submitted Feb 18, 2020

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Krutik Patel (PGR) Changing the name of your package while it has been submitted Feb 18, 2020

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Shepherd, Lori Changing the name of your package while it has been submitted Feb 18, 2020

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Krutik Patel (PGR) Changing the name of your package while it has been submitted Feb 18, 2020

[Bioc-devel] Integrating python into an R package

3 msgs Feb 18

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Zhang, David Integrating python into an R package Feb 18, 2020

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Turaga, Nitesh Integrating python into an R package Feb 18, 2020

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Vincent Carey Integrating python into an R package Feb 18, 2020

[Bioc-devel] Changing the maintanor of IMMAN package

2 msgs Feb 18

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Minoo Ashtiani Changing the maintanor of IMMAN package Feb 18, 2020

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Turaga, Nitesh Changing the maintanor of IMMAN package Feb 18, 2020

[Bioc-devel] Updates to SingleCellExperiment class structure - no action required

3 msgs Feb 16

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Aaron Lun Updates to SingleCellExperiment class structure - no action required Feb 16, 2020

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Kasper Daniel Hansen Updates to SingleCellExperiment class structure - no action required Feb 16, 2020

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Aaron Lun Updates to SingleCellExperiment class structure - no action required Feb 16, 2020

[Bioc-devel] rankprod package update

3 msgs Feb 14

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Francesco Del Carratore rankprod package update Feb 14, 2020

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Marcel Ramos rankprod package update Feb 14, 2020

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Shepherd, Lori rankprod package update Feb 14, 2020

[Bioc-devel] how to trace 'Matrix' as package dependency for 'GenomicScores'

10 msgs Feb 13

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Robert Castelo how to trace 'Matrix' as package dependency for 'GenomicScores' Feb 6, 2020

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Martin Morgan how to trace 'Matrix' as package dependency for 'GenomicScores' Feb 6, 2020

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Robert Castelo how to trace 'Matrix' as package dependency for 'GenomicScores' Feb 6, 2020

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Martin Morgan how to trace 'Matrix' as package dependency for 'GenomicScores' Feb 6, 2020

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Robert Castelo how to trace 'Matrix' as package dependency for 'GenomicScores' Feb 6, 2020

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Martin Morgan how to trace 'Matrix' as package dependency for 'GenomicScores' Feb 8, 2020

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Vincent Carey how to trace 'Matrix' as package dependency for 'GenomicScores' Feb 9, 2020

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Sean Davis how to trace 'Matrix' as package dependency for 'GenomicScores' Feb 9, 2020

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Robert Castelo how to trace 'Matrix' as package dependency for 'GenomicScores' Feb 12, 2020

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Vincent Carey how to trace 'Matrix' as package dependency for 'GenomicScores' Feb 13, 2020

[Bioc-devel] warning: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic

6 msgs Feb 13

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stefano iacus warning: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic Feb 12, 2020

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Martin Morgan warning: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic Feb 12, 2020

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Felix Ernst warning: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic Feb 12, 2020

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Marcel Ramos EXTERNAL: Re: warning: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic Feb 13, 2020

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stefano iacus EXTERNAL: Re: warning: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic Feb 13, 2020

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stefano iacus warning: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic Feb 13, 2020

[Bioc-devel] gds nodes dimensions are inconsistent

3 msgs Feb 13

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Liu, Qian gds nodes dimensions are inconsistent Feb 11, 2020

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Xiuwen Zheng gds nodes dimensions are inconsistent Feb 11, 2020

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Liu, Qian gds nodes dimensions are inconsistent Feb 13, 2020

[Bioc-devel] Bioconductor Git: Online interface

3 msgs Feb 11

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Henrik Bengtsson Bioconductor Git: Online interface Feb 11, 2020

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Martin Morgan Bioconductor Git: Online interface Feb 11, 2020

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Henrik Bengtsson Bioconductor Git: Online interface Feb 11, 2020

[Bioc-devel] help

2 msgs Feb 11

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Mohsen Nabian help Feb 11, 2020

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Martin Morgan help Feb 11, 2020

[Bioc-devel] help

2 msgs Feb 11

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Mohsen Nabian help Feb 11, 2020

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Martin Morgan help Feb 11, 2020

[Bioc-devel] help

1 msg Feb 11

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Mohsen Nabian help Feb 11, 2020

[Bioc-devel] Latest commit didn't update package

6 msgs Feb 11

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David Jimenez-Morales Latest commit didn't update package Feb 10, 2020

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Shepherd, Lori Latest commit didn't update package Feb 11, 2020

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David Jimenez-Morales Latest commit didn't update package Feb 11, 2020

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Shepherd, Lori Latest commit didn't update package Feb 11, 2020

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Martin Morgan Latest commit didn't update package Feb 11, 2020

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David Jimenez-Morales Latest commit didn't update package Feb 11, 2020

[Bioc-devel] Permission denied (publickey)

2 msgs Feb 11

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Danrley Fernandes Permission denied (publickey) Feb 11, 2020

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Turaga, Nitesh Permission denied (publickey) Feb 11, 2020

[Bioc-devel] Bioc2020 Registration Open - Call for abstracts workshops/talks/posters Open

1 msg Feb 11

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Shepherd, Lori Bioc2020 Registration Open - Call for abstracts workshops/talks/posters Open Feb 11, 2020

[Bioc-devel] Compatibility of Bioconductor with tidyverse S3 classes/methods

14 msgs Feb 8

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stefano iacus Compatibility of Bioconductor with tidyverse S3 classes/methods Feb 6, 2020

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Martin Morgan Compatibility of Bioconductor with tidyverse S3 classes/methods Feb 6, 2020

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Michael Lawrence Compatibility of Bioconductor with tidyverse S3 classes/methods Feb 6, 2020

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stefano iacus Compatibility of Bioconductor with tidyverse S3 classes/methods Feb 6, 2020

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Michael Lawrence Compatibility of Bioconductor with tidyverse S3 classes/methods Feb 6, 2020

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stefano iacus Compatibility of Bioconductor with tidyverse S3 classes/methods Feb 6, 2020

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Michael Lawrence Compatibility of Bioconductor with tidyverse S3 classes/methods Feb 6, 2020

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stefano iacus Compatibility of Bioconductor with tidyverse S3 classes/methods Feb 6, 2020

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Martin Morgan Compatibility of Bioconductor with tidyverse S3 classes/methods Feb 7, 2020

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Vincent Carey Compatibility of Bioconductor with tidyverse S3 classes/methods Feb 7, 2020

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stefano iacus Compatibility of Bioconductor with tidyverse S3 classes/methods Feb 7, 2020

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Vincent Carey Compatibility of Bioconductor with tidyverse S3 classes/methods Feb 8, 2020

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Martin Morgan Compatibility of Bioconductor with tidyverse S3 classes/methods Feb 8, 2020

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stefano iacus Compatibility of Bioconductor with tidyverse S3 classes/methods Feb 8, 2020

[Bioc-devel] ptime ERROR

6 msgs Feb 6

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Christopher John ptime ERROR Feb 6, 2020

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Christopher John ptime ERROR Feb 6, 2020

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Andris Jankevics ptime ERROR Feb 6, 2020

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Shepherd, Lori ptime ERROR Feb 6, 2020

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Andris Jankevics ptime ERROR Feb 6, 2020

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Shepherd, Lori ptime ERROR Feb 6, 2020

[Bioc-devel] Install and Build ERROR - CeTF package

4 msgs Feb 6

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Carlos Biagi Jr Install and Build ERROR - CeTF package Feb 6, 2020

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Andris Jankevics Install and Build ERROR - CeTF package Feb 6, 2020

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Shepherd, Lori Install and Build ERROR - CeTF package Feb 6, 2020

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Carlos Biagi Jr Install and Build ERROR - CeTF package Feb 6, 2020

[Bioc-devel] Compatibility of S4 and tidyverse

4 msgs Feb 6

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stefano iacus Compatibility of S4 and tidyverse Feb 6, 2020

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Neumann, Steffen Compatibility of S4 and tidyverse Feb 6, 2020

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Martin Morgan Compatibility of S4 and tidyverse Feb 6, 2020

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stefano iacus Compatibility of S4 and tidyverse Feb 6, 2020

[Bioc-devel] Account Activation Issue

1 msg Feb 6

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Turaga, Nitesh Account Activation Issue Feb 6, 2020

[Bioc-devel] Compatibility of S4 and tidyverse

1 msg Feb 6

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stefano iacus Compatibility of S4 and tidyverse Feb 6, 2020

[Bioc-devel] Compatibility of S4 and tidyverse

5 msgs Feb 6

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stefano iacus Compatibility of S4 and tidyverse Feb 5, 2020

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Michael Lawrence Compatibility of S4 and tidyverse Feb 5, 2020

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Martin Maechler Compatibility of S4 and tidyverse Feb 6, 2020

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stefano iacus Compatibility of S4 and tidyverse Feb 6, 2020

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Bernat Gel Compatibility of S4 and tidyverse Feb 6, 2020

[Bioc-devel] Account Activation Issue

1 msg Feb 6

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Opitz Lennart Account Activation Issue Feb 6, 2020

[Bioc-devel] DeMixT issue

2 msgs Feb 5

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py11 m@iii@g oii rice@edu DeMixT issue Feb 4, 2020

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Shepherd, Lori DeMixT issue Feb 5, 2020

[Bioc-devel] Problems on BiocCredentials account_activation

1 msg Feb 4

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Danrley Fernandes Problems on BiocCredentials account_activation Feb 4, 2020

[Bioc-devel] activation of account

4 msgs Feb 3

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Turaga, Nitesh activation of account Feb 3, 2020

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Mattthias Erwin Futschik activation of account Feb 3, 2020

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Alemu Takele activation of account Feb 3, 2020

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Martin Morgan activation of account Feb 3, 2020

[Bioc-devel] TIMEOUT error in building vignette in package scruff

1 msg Feb 3

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Hervé Pagès TIMEOUT error in building vignette in package scruff Feb 3, 2020

[Bioc-devel] Use of SummerisedExperiments or MultiAssayExperiments of many many Dataframes/ nested List objects

2 msgs Feb 3

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Dario Strbenac Use of SummerisedExperiments or MultiAssayExperiments of many many Dataframes/ nested List objects Jan 31, 2020

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Levi Waldron Use of SummerisedExperiments or MultiAssayExperiments of many many Dataframes/ nested List objects Feb 3, 2020