Bioc-devel May 2020

[Bioc-devel] Package Submission Limbo

3 msgs May 30

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Chris Eeles Package Submission Limbo May 30, 2020

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Martin Morgan Package Submission Limbo May 30, 2020

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Haibe-Kains, Benjamin Package Submission Limbo May 30, 2020

[Bioc-devel] request

4 msgs May 30

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Zhen Yang request May 30, 2020

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Kumar, Ashwath request May 30, 2020

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Martin Morgan request May 30, 2020

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Kumar, Ashwath request May 30, 2020

[Bioc-devel] Nightly update not updating my DESCRIPTION information

1 msg May 30

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Kumar, Ashwath Nightly update not updating my DESCRIPTION information May 30, 2020

[Bioc-devel] Vignette Building Latex Errors on Windows Release Branch

5 msgs May 29

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petr smirnov Vignette Building Latex Errors on Windows Release Branch May 15, 2020

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Sergio Picart Armada Vignette Building Latex Errors on Windows Release Branch May 15, 2020

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Mike Smith Vignette Building Latex Errors on Windows Release Branch May 18, 2020

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Shepherd, Lori Vignette Building Latex Errors on Windows Release Branch May 19, 2020

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Shepherd, Lori Vignette Building Latex Errors on Windows Release Branch May 29, 2020

[Bioc-devel] Single Package Builder for New Package Submission

1 msg May 27

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Shepherd, Lori Single Package Builder for New Package Submission May 27, 2020

[Bioc-devel] ELIXIR All Hands Keynotes by Janet Kelso & Dimitris Koureas as webinars

1 msg May 22

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Neumann, Steffen ELIXIR All Hands Keynotes by Janet Kelso & Dimitris Koureas as webinars May 22, 2020

[Bioc-devel] annotationhub troubleshooting

7 msgs May 21

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Pierre Germon annotationhub troubleshooting May 7, 2020

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Shepherd, Lori annotationhub troubleshooting May 7, 2020

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David Jimenez-Morales Error when pushing to RELEASE_3_11 May 21, 2020

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Nitesh Turaga Error when pushing to RELEASE_3_11 May 21, 2020

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David Jimenez-Morales Error when pushing to RELEASE_3_11 May 21, 2020

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Nitesh Turaga Error when pushing to RELEASE_3_11 May 21, 2020

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David Jimenez-Morales Error when pushing to RELEASE_3_11 May 21, 2020

[Bioc-devel] EnMCB issues in version numbers

1 msg May 19

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xin wwa EnMCB issues in version numbers May 19, 2020

[Bioc-devel] UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 234445: ordinal not in range(128)

1 msg May 18

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Jakob Theorell UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 234445: ordinal not in range(128) May 18, 2020

[Bioc-devel] No credentials for reconsi

2 msgs May 18

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Stijn Hawinkel No credentials for reconsi May 17, 2020

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Nitesh Turaga No credentials for reconsi May 18, 2020

[Bioc-devel] Package submission awaiting moderation

2 msgs May 14

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顾祖光 Package submission awaiting moderation May 14, 2020

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Martin Morgan Package submission awaiting moderation May 14, 2020

[Bioc-devel] Do not push with merge conflicts to Bioconductor git repo.

1 msg May 13

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Nitesh Turaga Do not push with merge conflicts to Bioconductor git repo. May 13, 2020

[Bioc-devel] How to use initializing functions correctly ?

3 msgs May 13

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Charles Plessy How to use initializing functions correctly ? May 11, 2020

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Hervé Pagès How to use initializing functions correctly ? May 12, 2020

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Charles Plessy How to use initializing functions correctly ? May 13, 2020

[Bioc-devel] Debugging not updated for coexnet package

5 msgs May 13

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Juan David Henao Sanchez Debugging not updated for coexnet package May 12, 2020

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Shepherd, Lori Debugging not updated for coexnet package May 12, 2020

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Hervé Pagès Debugging not updated for coexnet package May 12, 2020

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Juan David Henao Sanchez Debugging not updated for coexnet package May 13, 2020

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Shepherd, Lori Debugging not updated for coexnet package May 13, 2020

[Bioc-devel] BgeeCall package present twice

2 msgs May 13

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Julien Wollbrett BgeeCall package present twice May 13, 2020

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Shepherd, Lori BgeeCall package present twice May 13, 2020

[Bioc-devel] The new version of the package 'cbaf' is not downloadable for BioC 3.11

4 msgs May 13

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Arman Shahrisa The new version of the package 'cbaf' is not downloadable for BioC 3.11 May 7, 2020

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Shepherd, Lori The new version of the package 'cbaf' is not downloadable for BioC 3.11 May 7, 2020

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Hervé Pagès The new version of the package 'cbaf' is not downloadable for BioC 3.11 May 12, 2020

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Lluís Revilla The new version of the package 'cbaf' is not downloadable for BioC 3.11 May 13, 2020

[Bioc-devel] Purpose of subsetted GO tables in OrgDb packages

2 msgs May 12

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James W. MacDonald Purpose of subsetted GO tables in OrgDb packages May 11, 2020

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Martin Morgan Purpose of subsetted GO tables in OrgDb packages May 12, 2020

[Bioc-devel] How to import a setAs method in one's package?

5 msgs May 9

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Bhagwat, Aditya How to import a setAs method in one's package? May 8, 2020

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Bhagwat, Aditya How to import a setAs method in one's package? May 8, 2020

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Hervé Pagès How to import a setAs method in one's package? May 8, 2020

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Michael Lawrence How to import a setAs method in one's package? May 8, 2020

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Bhagwat, Aditya How to import a setAs method in one's package? May 9, 2020

[Bioc-devel] Issues with annotation packages

2 msgs May 8

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Interdonato, Kayla Issues with annotation packages May 4, 2020

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Interdonato, Kayla Issues with annotation packages May 8, 2020

[Bioc-devel] Docker images for RELEASE_3_11 and devel on R-4.0.0

1 msg May 8

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Nitesh Turaga Docker images for RELEASE_3_11 and devel on R-4.0.0 May 8, 2020

[Bioc-devel] BiocCheck-a-thon!

1 msg May 7

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Martin Morgan BiocCheck-a-thon! May 7, 2020

[Bioc-devel] Docker images for RELEASE_3_11 and devel on R-4.0.0

1 msg May 7

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Nitesh Turaga Docker images for RELEASE_3_11 and devel on R-4.0.0 May 7, 2020

[Bioc-devel] Failing Travis build on bioc-devel

3 msgs May 7

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Waldir Leoncio Netto Failing Travis build on bioc-devel May 7, 2020

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Charlotte Soneson Failing Travis build on bioc-devel May 7, 2020

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Waldir Leoncio Netto Failing Travis build on bioc-devel May 7, 2020

[Bioc-devel] 3.11 builds: no new report since last Friday

1 msg May 5

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Hervé Pagès 3.11 builds: no new report since last Friday May 5, 2020

[Bioc-devel] Could not read from remote repository

9 msgs May 5

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Yingxin Lin Could not read from remote repository May 3, 2020

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Nitesh Turaga Could not read from remote repository May 4, 2020

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Yingxin Lin Could not read from remote repository May 4, 2020

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Nitesh Turaga Could not read from remote repository May 4, 2020

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Yingxin Lin Could not read from remote repository May 4, 2020

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Chengyang.Ji12 Could not read from remote repository May 4, 2020

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Yingxin Lin Could not read from remote repository May 4, 2020

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Nitesh Turaga Could not read from remote repository May 5, 2020

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Yingxin Lin Could not read from remote repository May 5, 2020

[Bioc-devel] Windows Development Build Error Message for COHCAP

2 msgs May 4

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Charles Warden Windows Development Build Error Message for COHCAP May 4, 2020

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Shepherd, Lori Windows Development Build Error Message for COHCAP May 4, 2020

[Bioc-devel] Fw: Change mantainer

1 msg May 1

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Climente Hector Change mantainer May 1, 2020

[Bioc-devel] write access to the package

3 msgs May 1

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Hamed Haseli write access to the package May 1, 2020

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Nitesh Turaga write access to the package May 1, 2020

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Hamed Haseli write access to the package May 1, 2020

[Bioc-devel] LazyData in DESCRIPTION file

6 msgs May 1

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Vinh Tran LazyData in DESCRIPTION file May 1, 2020

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Kasper Daniel Hansen LazyData in DESCRIPTION file May 1, 2020

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Martin Morgan LazyData in DESCRIPTION file May 1, 2020

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Vincent Carey LazyData in DESCRIPTION file May 1, 2020

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Vinh Tran LazyData in DESCRIPTION file May 1, 2020

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Vinh Tran LazyData in DESCRIPTION file May 1, 2020

[Bioc-devel] EXTERNAL: Final List of Deprecated Packages for Bioc3.11

1 msg May 1

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Interdonato, Kayla EXTERNAL: Final List of Deprecated Packages for Bioc3.11 May 1, 2020

[Bioc-devel] Bioconductor 3.11 OrgDb and TxDb packages now available

1 msg May 1

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Interdonato, Kayla Bioconductor 3.11 OrgDb and TxDb packages now available May 1, 2020