Bioc-devel April 2022

[Bioc-devel] SSH key_

2 msgs Apr 30

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Loubna Youssar SSH key_ Apr 27, 2022

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Shepherd, Lori SSH key_ Apr 30, 2022

[Bioc-devel] Minimize repo redundancy, is the original Github repo before package submissions still needed?

2 msgs Apr 29

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Christian Arnold Minimize repo redundancy, is the original Github repo before package submissions still needed? Apr 29, 2022

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Shepherd, Lori Minimize repo redundancy, is the original Github repo before package submissions still needed? Apr 29, 2022

[Bioc-devel] Bioconductor 3.15 is Released!

7 msgs Apr 28

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Shepherd, Lori Bioconductor 3.15 is Released! Apr 27, 2022

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Stevie Pederson Bioconductor 3.15 is Released! Apr 27, 2022

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Dario Strbenac Bioconductor 3.15 is Released! Apr 27, 2022

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Shepherd, Lori Bioconductor 3.15 is Released! Apr 28, 2022

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Christian Arnold Bioconductor 3.15 is Released! Apr 28, 2022

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Shepherd, Lori Bioconductor 3.15 is Released! Apr 28, 2022

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Stevie Pederson Bioconductor 3.15 is Released! Apr 28, 2022

[Bioc-devel] decoupleR 3.14 build error

2 msgs Apr 27

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Pau Badia i Mompel decoupleR 3.14 build error Apr 26, 2022

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Shepherd, Lori decoupleR 3.14 build error Apr 27, 2022

[Bioc-devel] RELEASE_3_15 branch is now available and push access is re-enabled.

1 msg Apr 26

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Nitesh Turaga RELEASE_3_15 branch is now available and push access is re-enabled. Apr 26, 2022

[Bioc-devel] All commits to Bioconductor stopped from 10:30am EST for release

3 msgs Apr 26

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Nitesh Turaga All commits to Bioconductor stopped from 10:30am EST for release Apr 26, 2022

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Nitesh Turaga All commits to Bioconductor stopped from 10:30am EST for release Apr 26, 2022

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Nitesh Turaga All commits to Bioconductor stopped from 10:30am EST for release Apr 26, 2022

[Bioc-devel] adding Medaka to BSgenome

1 msg Apr 26

A

Ali Ahmed Seleit adding Medaka to BSgenome Apr 26, 2022

[Bioc-devel] cbaf and package dependency issue

2 msgs Apr 26

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Arman Shahrisa cbaf and package dependency issue Apr 25, 2022

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Marcel Ramos EXTERNAL: cbaf and package dependency issue Apr 26, 2022

[Bioc-devel] Last day to make commits before Bioconductor RELEASE 3.15

2 msgs Apr 25

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Shepherd, Lori Last day to make commits before Bioconductor RELEASE 3.15 Apr 25, 2022

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Shepherd, Lori Last day to make commits before Bioconductor RELEASE 3.15 Apr 25, 2022

[Bioc-devel] Suggested package in Vignette

2 msgs Apr 22

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Yuanning Zheng Suggested package in Vignette Apr 22, 2022

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Shepherd, Lori Suggested package in Vignette Apr 22, 2022

[Bioc-devel] Can't push to RadioGx upstream

2 msgs Apr 22

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Chris Eeles Can't push to RadioGx upstream Apr 22, 2022

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Shepherd, Lori Can't push to RadioGx upstream Apr 22, 2022

[Bioc-devel] Bioc2022 Registration now open.

1 msg Apr 22

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Shepherd, Lori Bioc2022 Registration now open. Apr 22, 2022

[Bioc-devel] Can't push to upstream/RELEASE_3_14

2 msgs Apr 21

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Fabricio de Almeida Can't push to upstream/RELEASE_3_14 Apr 21, 2022

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Shepherd, Lori Can't push to upstream/RELEASE_3_14 Apr 21, 2022

[Bioc-devel] Strange error with function existing in the collated R files

2 msgs Apr 20

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Panagiotis Moulos Strange error with function existing in the collated R files Apr 20, 2022

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Hervé Pagès Strange error with function existing in the collated R files Apr 20, 2022

[Bioc-devel] Problem with version bump, fmrs

4 msgs Apr 20

F

Farhad Shokoohi Problem with version bump, fmrs Apr 20, 2022

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Marcel Ramos EXTERNAL: Problem with version bump, fmrs Apr 20, 2022

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Nitesh Turaga Problem with version bump, fmrs Apr 20, 2022

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Shepherd, Lori Problem with version bump, fmrs Apr 20, 2022

[Bioc-devel] Important Bioconductor Release 3.15 deadlines this week!

1 msg Apr 20

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Shepherd, Lori Important Bioconductor Release 3.15 deadlines this week! Apr 20, 2022

[Bioc-devel] Best alternative to transferring large data in parallel runs, To be used in IntEREst

1 msg Apr 20

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Martin Morgan Best alternative to transferring large data in parallel runs, To be used in IntEREst Apr 20, 2022

[Bioc-devel] Abstract submission for EuroBioC2022 open

1 msg Apr 20

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Charlotte Soneson Abstract submission for EuroBioC2022 open Apr 20, 2022

[Bioc-devel] Issue to do git push upstream master for coMET package

3 msgs Apr 19

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Martin, Tiphaine Issue to do git push upstream master for coMET package Apr 19, 2022

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Nitesh Turaga Issue to do git push upstream master for coMET package Apr 19, 2022

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Martin, Tiphaine Issue to do git push upstream master for coMET package Apr 19, 2022

[Bioc-devel] Packages relying on rJava failing on merida1

2 msgs Apr 19

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Anestis Gkanogiannis Packages relying on rJava failing on merida1 Apr 19, 2022

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Jennifer Wokaty Packages relying on rJava failing on merida1 Apr 19, 2022

[Bioc-devel] Bioconductor 3.15 db0s, OrgDbs and TxDbs now available

2 msgs Apr 19

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Interdonato, Kayla Bioconductor 3.15 db0s, OrgDbs and TxDbs now available Apr 12, 2022

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Interdonato, Kayla Bioconductor 3.15 db0s, OrgDbs and TxDbs now available Apr 19, 2022

[Bioc-devel] Best alternative to transferring large data in parallel runs, To be used in IntEREst

5 msgs Apr 19

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Oghabian, Ali Best alternative to transferring large data in parallel runs, To be used in IntEREst Apr 19, 2022

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Martin Morgan Best alternative to transferring large data in parallel runs, To be used in IntEREst Apr 19, 2022

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Oghabian, Ali Best alternative to transferring large data in parallel runs, To be used in IntEREst Apr 19, 2022

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Martin Morgan Best alternative to transferring large data in parallel runs, To be used in IntEREst Apr 19, 2022

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Oghabian, Ali Best alternative to transferring large data in parallel runs, To be used in IntEREst Apr 19, 2022

[Bioc-devel] [EXTERNAL] Re: Bioconductor package rcellminerData

1 msg Apr 18

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Elloumi, Fathi (NIH/NCI) [C] Bioconductor package rcellminerData Apr 18, 2022

[Bioc-devel] Bioconductor package rcellminerData

2 msgs Apr 18

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Elloumi, Fathi (NIH/NCI) [C] Bioconductor package rcellminerData Apr 18, 2022

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Shepherd, Lori Bioconductor package rcellminerData Apr 18, 2022

[Bioc-devel] Windows Server Catastrophe?

1 msg Apr 14

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Chris Eeles Windows Server Catastrophe? Apr 14, 2022

[Bioc-devel] python function in Basilisk never finishes

3 msgs Apr 14

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Clemens Kohl python function in Basilisk never finishes Apr 14, 2022

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Quang Nguyen python function in Basilisk never finishes Apr 14, 2022

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Elzbieta Gralinska python function in Basilisk never finishes Apr 14, 2022

[Bioc-devel] List of Deprecated Packages for Bioc3.15

1 msg Apr 14

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Shepherd, Lori List of Deprecated Packages for Bioc3.15 Apr 14, 2022

[Bioc-devel] Issue with landing page of seqArchR package

1 msg Apr 14

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Sarvesh Nikumbh Issue with landing page of seqArchR package Apr 14, 2022

[Bioc-devel] RELEASE_3_14 branch frozen

1 msg Apr 11

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Nitesh Turaga RELEASE_3_14 branch frozen Apr 11, 2022

[Bioc-devel] RELEASE_3_14 branch freeze at 1pm EDT today.

5 msgs Apr 11

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Nitesh Turaga RELEASE_3_14 branch freeze at 1pm EDT today. Apr 11, 2022

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Brian Schilder RELEASE_3_14 branch freeze at 1pm EDT today. Apr 11, 2022

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Nitesh Turaga RELEASE_3_14 branch freeze at 1pm EDT today. Apr 11, 2022

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Brian Schilder RELEASE_3_14 branch freeze at 1pm EDT today. Apr 11, 2022

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Shepherd, Lori RELEASE_3_14 branch freeze at 1pm EDT today. Apr 11, 2022

[Bioc-devel] orthogene: evolving dependencies

5 msgs Apr 10

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Brian Schilder orthogene: evolving dependencies Apr 4, 2022

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Hervé Pagès orthogene: evolving dependencies Apr 4, 2022

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Brian Schilder orthogene: evolving dependencies Apr 6, 2022

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Hervé Pagès orthogene: evolving dependencies Apr 7, 2022

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Brian Schilder orthogene: evolving dependencies Apr 10, 2022

[Bioc-devel] Hook declined

5 msgs Apr 8

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Krutik Patel Hook declined Apr 7, 2022

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Nitesh Turaga Hook declined Apr 7, 2022

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Fabricio de Almeida Hook declined Apr 7, 2022

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Shepherd, Lori Hook declined Apr 8, 2022

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Krutik Patel Hook declined Apr 8, 2022

[Bioc-devel] Bioconductor Release 3.14 Code Freeze

4 msgs Apr 8

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Shepherd, Lori Bioconductor Release 3.14 Code Freeze Apr 8, 2022

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Keita Iida Bioconductor Release 3.14 Code Freeze Apr 8, 2022

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Shepherd, Lori Bioconductor Release 3.14 Code Freeze Apr 8, 2022

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Keita Iida Bioconductor Release 3.14 Code Freeze Apr 8, 2022

[Bioc-devel] Adding a new annotation file (size ~ 9MB) into the Bioconductor Rsubread package

7 msgs Apr 8

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Yang Liao Adding a new annotation file (size ~ 9MB) into the Bioconductor Rsubread package Apr 8, 2022

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Shepherd, Lori Adding a new annotation file (size ~ 9MB) into the Bioconductor Rsubread package Apr 8, 2022

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Hervé Pagès Adding a new annotation file (size ~ 9MB) into the Bioconductor Rsubread package Apr 8, 2022

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Yang Liao Adding a new annotation file (size ~ 9MB) into the Bioconductor Rsubread package Apr 8, 2022

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Hervé Pagès Adding a new annotation file (size ~ 9MB) into the Bioconductor Rsubread package Apr 8, 2022

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Yang Liao Adding a new annotation file (size ~ 9MB) into the Bioconductor Rsubread package Apr 8, 2022

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Hervé Pagès Adding a new annotation file (size ~ 9MB) into the Bioconductor Rsubread package Apr 8, 2022

[Bioc-devel] update maintainer email

3 msgs Apr 8

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Gross Fridolin update maintainer email Apr 4, 2022

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Nitesh Turaga update maintainer email Apr 4, 2022

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Nitesh Turaga update maintainer email Apr 8, 2022

[Bioc-devel] midasHLA problems reported in the Multiple platform build/check report for BioC 3.15

2 msgs Apr 7

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migdal migdal midasHLA problems reported in the Multiple platform build/check report for BioC 3.15 Apr 7, 2022

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Shepherd, Lori midasHLA problems reported in the Multiple platform build/check report for BioC 3.15 Apr 7, 2022

[Bioc-devel] Transfer maintainer role for CARNIVAL and cosmosR

3 msgs Apr 7

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Attila Gabor Transfer maintainer role for CARNIVAL and cosmosR Apr 7, 2022

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Shepherd, Lori Transfer maintainer role for CARNIVAL and cosmosR Apr 7, 2022

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Nitesh Turaga Transfer maintainer role for CARNIVAL and cosmosR Apr 7, 2022

[Bioc-devel] Bioconductor guidelines for R and Julia integration

1 msg Apr 4

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Jennifer Wokaty Bioconductor guidelines for R and Julia integration Apr 4, 2022