Bioc-devel - April 2024 - Thread View

[Bioc-devel] Bioconductor Mirrors - Important Updates During Release Time

1 msg Apr 30

Shepherd, Lori Bioconductor Mirrors - Important Updates During Release Time Apr 30, 2024

[Bioc-devel] RELEASE_3_19 branch is now available and push access is re-enabled

1 msg Apr 30

Shepherd, Lori RELEASE_3_19 branch is now available and push access is re-enabled Apr 30, 2024

[Bioc-devel] Adding git write access for newly accepted package when a key already exists

2 msgs Apr 30

Hahsler, Michael Adding git write access for newly accepted package when a key already exists Apr 30, 2024

Shepherd, Lori Adding git write access for newly accepted package when a key already exists Apr 30, 2024

[Bioc-devel] problem with git push to bioconductor ‘DENIED by fallthru’

3 msgs Apr 30

Lorena Pantano problem with git push to bioconductor ‘DENIED by fallthru’ Apr 30, 2024

Shepherd, Lori problem with git push to bioconductor ‘DENIED by fallthru’ Apr 30, 2024

Lorena Pantano problem with git push to bioconductor ‘DENIED by fallthru’ Apr 30, 2024

[Bioc-devel] BioC2024 deadlines approaching

1 msg Apr 30

Maria.Doyle BioC2024 deadlines approaching Apr 30, 2024

[Bioc-devel] Error on macOS (merida1)

4 msgs Apr 30

Carlotta Meyring Error on macOS (merida1) Apr 26, 2024

Shepherd, Lori Error on macOS (merida1) Apr 26, 2024

Carlotta Meyring Error on macOS (merida1) Apr 30, 2024

Shepherd, Lori Error on macOS (merida1) Apr 30, 2024

[Bioc-devel] All commits to Bioconductor stopped from 8:00 am ET for release

1 msg Apr 30

Shepherd, Lori All commits to Bioconductor stopped from 8:00 am ET for release Apr 30, 2024

[Bioc-devel] cliqueMS request for undeprecation as all errors have been fixed

3 msgs Apr 29

Oriol Senan Campos cliqueMS request for undeprecation as all errors have been fixed Apr 25, 2024

Shepherd, Lori cliqueMS request for undeprecation as all errors have been fixed Apr 26, 2024

Shepherd, Lori cliqueMS request for undeprecation as all errors have been fixed Apr 29, 2024

[Bioc-devel] Last day to make commits before Bioconductor RELEASE 3.19

1 msg Apr 29

Shepherd, Lori Last day to make commits before Bioconductor RELEASE 3.19 Apr 29, 2024

[Bioc-devel] Fixed error on gemma.R

2 msgs Apr 26

Burak Ogan Mancarci Fixed error on gemma.R Apr 26, 2024

Shepherd, Lori Fixed error on gemma.R Apr 26, 2024

[Bioc-devel] Build errors related to the new pwalign package

2 msgs Apr 25

Hervé Pagès Build errors related to the new pwalign package Apr 24, 2024

Hervé Pagès Build errors related to the new pwalign package Apr 25, 2024

[Bioc-devel] Biostrings: substitution matrices disappeared?

9 msgs Apr 25

Ulrich Bodenhofer Biostrings: substitution matrices disappeared? Apr 24, 2024

Martin Grigorov Biostrings: substitution matrices disappeared? Apr 24, 2024

Ulrich Bodenhofer Biostrings: substitution matrices disappeared? Apr 24, 2024

Hervé Pagès Biostrings: substitution matrices disappeared? Apr 25, 2024

Ulrich Bodenhofer Biostrings: substitution matrices disappeared? Apr 25, 2024

Hervé Pagès Biostrings: substitution matrices disappeared? Apr 25, 2024

Ulrich Bodenhofer Biostrings: substitution matrices disappeared? Apr 25, 2024

Hervé Pagès Biostrings: substitution matrices disappeared? Apr 25, 2024

Ulrich Bodenhofer Biostrings: substitution matrices disappeared? Apr 25, 2024

[Bioc-devel] nebbiolo1 - build report

4 msgs Apr 24

Kristian Ullrich nebbiolo1 - build report Apr 24, 2024

Hervé Pagès nebbiolo1 - build report Apr 24, 2024

Jennifer Wokaty nebbiolo1 - build report Apr 24, 2024

[Bioc-devel] MIRit fails to build on palomino3

2 msgs Apr 24

Jacopo Ronchi MIRit fails to build on palomino3 Apr 24, 2024

Shepherd, Lori MIRit fails to build on palomino3 Apr 24, 2024

[Bioc-devel] New annotation hub package?

2 msgs Apr 24

Sara López Ruiz de Vargas New annotation hub package? Apr 24, 2024

Shepherd, Lori New annotation hub package? Apr 24, 2024

[Bioc-devel] Package passing checks on Linux and macOS but failing on Windows

3 msgs Apr 24

Richard Heery Package passing checks on Linux and macOS but failing on Windows Apr 24, 2024

Shepherd, Lori Package passing checks on Linux and macOS but failing on Windows Apr 24, 2024

Richard Heery Package passing checks on Linux and macOS but failing on Windows Apr 24, 2024

[Bioc-devel] Final Reminder: EuroBioC2024 Abstract Deadline April 26th

1 msg Apr 24

Maria.Doyle Final Reminder: EuroBioC2024 Abstract Deadline April 26th Apr 24, 2024

[Bioc-devel] Additional commit access for the BindingSiteFinder package

2 msgs Apr 24

Klostermann, Melina Additional commit access for the BindingSiteFinder package Apr 24, 2024

Shepherd, Lori Additional commit access for the BindingSiteFinder package Apr 24, 2024

[Bioc-devel] singleCellTK

4 msgs Apr 23

Joshua Campbell singleCellTK Apr 22, 2024

Shepherd, Lori singleCellTK Apr 22, 2024

Shepherd, Lori singleCellTK Apr 23, 2024

Joshua Campbell singleCellTK Apr 23, 2024

[Bioc-devel] Important Bioconductor Release 3.19 deadlines this week

1 msg Apr 23

Shepherd, Lori Important Bioconductor Release 3.19 deadlines this week Apr 23, 2024

[Bioc-devel] git commit issues

4 msgs Apr 23

Carlotta Meyring git commit issues Apr 23, 2024

Shepherd, Lori git commit issues Apr 23, 2024

Carlotta Meyring git commit issues Apr 23, 2024

Shepherd, Lori git commit issues Apr 23, 2024

[Bioc-devel] R devel has skipped to 4.5?

4 msgs Apr 23

Richard Heery R devel has skipped to 4.5? Apr 23, 2024

Gábor Csárdi R devel has skipped to 4.5? Apr 23, 2024

Lori Shepherd R devel has skipped to 4.5? Apr 23, 2024

Richard Heery R devel has skipped to 4.5? Apr 23, 2024

[Bioc-devel] R version dependency

5 msgs Apr 23

Richard Heery R version dependency Apr 22, 2024

Hervé Pagès R version dependency Apr 22, 2024

Anatoly Sorokin R version dependency Apr 22, 2024

Richard Heery R version dependency Apr 23, 2024

Lori Shepherd R version dependency Apr 23, 2024

[Bioc-devel] Important Bioconductor Release Deadlines

11 msgs Apr 22

Anatoly Sorokin Important Bioconductor Release Deadlines Apr 4, 2024

Henrik Bengtsson Important Bioconductor Release Deadlines Apr 4, 2024

Anatoly Sorokin Important Bioconductor Release Deadlines Apr 4, 2024

Levi Waldron Important Bioconductor Release Deadlines Apr 4, 2024

Anatoly Sorokin Important Bioconductor Release Deadlines Apr 4, 2024

Vincent Carey Important Bioconductor Release Deadlines Apr 5, 2024

Shepherd, Lori Important Bioconductor Release Deadlines Apr 5, 2024

Henrik Bengtsson Important Bioconductor Release Deadlines Apr 8, 2024

Anatoly Sorokin Important Bioconductor Release Deadlines Apr 17, 2024

Kasper Daniel Hansen Important Bioconductor Release Deadlines Apr 22, 2024

[Bioc-devel] org.Hs.eg.db contains no GRPEL1 gene

5 msgs Apr 19

Anatoly Sorokin org.Hs.eg.db contains no GRPEL1 gene Apr 17, 2024

James W. MacDonald org.Hs.eg.db contains no GRPEL1 gene Apr 18, 2024

Anatoly Sorokin org.Hs.eg.db contains no GRPEL1 gene Apr 18, 2024

James W. MacDonald org.Hs.eg.db contains no GRPEL1 gene Apr 19, 2024

[Bioc-devel] unix package in suggest leads to check error

3 msgs Apr 19

Alexey Sergushichev unix package in suggest leads to check error Apr 19, 2024

Hervé Pagès unix package in suggest leads to check error Apr 19, 2024

Alexey Sergushichev unix package in suggest leads to check error Apr 19, 2024

[Bioc-devel] Bioconductor 3.19 db0s, OrgDbs, and TxDbs now available

1 msg Apr 18

James W. MacDonald Bioconductor 3.19 db0s, OrgDbs, and TxDbs now available Apr 18, 2024

[Bioc-devel] Request to Retire COHCAP Bioconductor Package

3 msgs Apr 16

Charles Warden Request to Retire COHCAP Bioconductor Package Apr 15, 2024

Shepherd, Lori Request to Retire COHCAP Bioconductor Package Apr 16, 2024

Charles Warden Request to Retire COHCAP Bioconductor Package Apr 16, 2024

[Bioc-devel] Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`

1 msg Apr 16

Shepherd, Lori Bioconductor will rename the default branch on `git.bioconductor.org` to `devel` Apr 16, 2024

[Bioc-devel] Release_3_18 branch is now frozen.

1 msg Apr 15

Shepherd, Lori Release_3_18 branch is now frozen. Apr 15, 2024

[Bioc-devel] RELEASE_3_18 branch frozen in a few hours

1 msg Apr 15

Shepherd, Lori RELEASE_3_18 branch frozen in a few hours Apr 15, 2024

[Bioc-devel] Important Release 3.18 Freeze Announcment

1 msg Apr 12

Shepherd, Lori Important Release 3.18 Freeze Announcment Apr 12, 2024

[Bioc-devel] Reminder: EuroBioC2024 abstract submission due April 26th

1 msg Apr 12

Maria.Doyle Reminder: EuroBioC2024 abstract submission due April 26th Apr 12, 2024

[Bioc-devel] required force push to bioconductor

2 msgs Apr 11

Rheinnecker, Marco required force push to bioconductor Apr 8, 2024

Shepherd, Lori required force push to bioconductor Apr 11, 2024

[Bioc-devel] Is package name "ADAPT" available?

5 msgs Apr 9

Mukai Wang Is package name "ADAPT" available? Apr 9, 2024

Oliver Crook Is package name "ADAPT" available? Apr 9, 2024

Mukai Wang Is package name "ADAPT" available? Apr 9, 2024

Hervé Pagès Is package name "ADAPT" available? Apr 9, 2024

Mukai Wang Is package name "ADAPT" available? Apr 9, 2024

[Bioc-devel] List of Deprecated Packages for Bioc3.19

1 msg Apr 9

Shepherd, Lori List of Deprecated Packages for Bioc3.19 Apr 9, 2024

[Bioc-devel] Moderately large files in an Experiment Data package?

3 msgs Apr 8

Barry, Timothy P Moderately large files in an Experiment Data package? Apr 5, 2024

Shepherd, Lori Moderately large files in an Experiment Data package? Apr 8, 2024

Barry, Timothy P Moderately large files in an Experiment Data package? Apr 8, 2024

[Bioc-devel] plyranges maintainer update

2 msgs Apr 8

Stuart Lee plyranges maintainer update Apr 5, 2024

Shepherd, Lori plyranges maintainer update Apr 8, 2024

[Bioc-devel] duplicated entries with 'ExperimentHub(localHub=TRUE)'

6 msgs Apr 5

Robert Castelo duplicated entries with 'ExperimentHub(localHub=TRUE)' Apr 4, 2024

Shepherd, Lori duplicated entries with 'ExperimentHub(localHub=TRUE)' Apr 5, 2024

Robert Castelo duplicated entries with 'ExperimentHub(localHub=TRUE)' Apr 5, 2024

Shepherd, Lori duplicated entries with 'ExperimentHub(localHub=TRUE)' Apr 5, 2024

Levi Waldron duplicated entries with 'ExperimentHub(localHub=TRUE)' Apr 5, 2024

[Bioc-devel] [ext] Package size issue

1 msg Apr 3

G@briei@Viii@mii m@iii@g oii mdc-berii@@de Package size issue Apr 3, 2024

[Bioc-devel] Omada package failing due to removed dependency

2 msgs Apr 2

Sokratis Kariotis Omada package failing due to removed dependency Apr 1, 2024

Sokratis Kariotis Omada package failing due to removed dependency Apr 2, 2024

[Bioc-devel] SVMDO devel branch CITATION PROBLEM

2 msgs Apr 2

erhanozer19 SVMDO devel branch CITATION PROBLEM Apr 1, 2024

Jennifer Wokaty SVMDO devel branch CITATION PROBLEM Apr 2, 2024

[Bioc-devel] Updating Package Issue

2 msgs Apr 2

Tallulah Andrews Updating Package Issue Apr 2, 2024

Shepherd, Lori Updating Package Issue Apr 2, 2024

Bioc-devel April 2024