[Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it
Owkies, thx! Aditya From: Shepherd, Lori <Lori.Shepherd at RoswellPark.org> Sent: Freitag, 12. Juni 2020 17:42 To: Bhagwat, Aditya <Aditya.Bhagwat at mpi-bn.mpg.de>; bioc-devel at r-project.org Subject: Re: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it If you git clone the git.bioconductor.org repository for your package in a different folder location you would be able to see the copy and commits we have on our server (I understand not very convenient) There is a delay from commits to updates on the building reports and landing page. It is discussed at the top of the page and has been answered numerous times on the mailing list http://bioconductor.org/developers/how-to/troubleshoot-build-report/ We are in the process of potentially expanding the submission process tracker building on commit to the daily builder. There is still no time period on when that would be available as it has just started being explored. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263
From: Bhagwat, Aditya <Aditya.Bhagwat at mpi-bn.mpg.de<mailto:Aditya.Bhagwat at mpi-bn.mpg.de>>
Sent: Friday, June 12, 2020 11:33 AM
To: Shepherd, Lori <Lori.Shepherd at RoswellPark.org<mailto:Lori.Shepherd at RoswellPark.org>>; bioc-devel at r-project.org<mailto:bioc-devel at r-project.org> <bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>>
Subject: RE: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it
Sent: Friday, June 12, 2020 11:33 AM
To: Shepherd, Lori <Lori.Shepherd at RoswellPark.org<mailto:Lori.Shepherd at RoswellPark.org>>; bioc-devel at r-project.org<mailto:bioc-devel at r-project.org> <bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>>
Subject: RE: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it
Thankyou Lori, Is there a way to get a visual overview of recent commits at https://git.bioconductor.org/packages/multicrispr<https://secure-web.cisco.com/1DzTC21Xsa01UK-VZkKk4yvwj_VU6qp85rqzcKCvvPMtm2vah4-NZjCAOKXcKftajD-J_w4XNYR6kLkwlc3GHf2OiIPJgqZyL75sZ8VqF0VU14xhmRORFhrGnYF9LaVvgeCdpIHt6nYIpOP1Iqtm4SxSlQZxBPes6PuXMj0O8IKEzoYniEDKV8i0Om9zJq0V6MZ5t82_OwcYqQlomckoYFnPfegBOQTE0zImOFpX4OVb7EbkBxnsULFIX__s_wylxcSctW2sWmwOs1YzSytASDL87V2RYWBOBRZ6vrGyj7WCe3ucom8SmlnU_D9whWOO34I4eG4ErtNZIravWIuPUXw/https%3A%2F%2Fgit.bioconductor.org%2Fpackages%2Fmulticrispr>? (as in e.g. github) Asking because I cannot see recent commits (pushed to upstream successfully yesterday) reflected in build reports<https://secure-web.cisco.com/1jJOzEyoW2u-3tHDFcgIXdMcB7kOXmu9Nm8ZW3YJPv38b7AL5FKIwuPDG-mk-VK2RdohHNb094i-Jw69AJKUHMEPRCwSDJc3epGdu1oXfs3y1pB4y9EIq5qq64scEvOXk4qo434vvfrRlgLpROeZnAVed-P0lE-Wg3VADtxGOEomvwrpyClTfASKZR3hzSGuZI7oP522KScMh4MwjaWXtAvFU6AX54GaGDPWsBy2-LvKJhkK5MXA88qDQPAps3DTlT9OOx3QBU3Vn-K3rD4-PosS7lXJ7JkrlXfSzmnMzctmZx8fpRukHIFeC7zo7VIE1D3-7SqwQriVj90ow34NVGW2G_s4ro-fKJSxtqlNzak8/https%3A%2F%2Fbioconductor.org%2FcheckResults%2F3.12%2Fbioc-LATEST%2F> or landing page<https://secure-web.cisco.com/1A2W_b5ZAOGQ8Ht9ZFzC1E_hGsPYkaraU-OYX5DQLKHG1CDSVVsO3z1RrEZifTEa7Be45ASdmCX4DLcPoH3dlRN9kF-SCtD1Cqzd1h74rL-bm97PldOPsCjm_QrIhfwXtWbjmgjCOqdc4z_LYwHKcUQXizoM8Twn_0y0mvBIg_kXlp9AzxF31kdHa33NPA-VVAAk1VuF1yJWS2bFMg_LU51SXt24BoFVNmtsGKIyWbU5C2UB1yLcTq5EvalNJzI7eBgOwPDLObUy0W8SYa5A24zf3N6GDwchPgOXL5EOhsK-_W4VZnHnQFeNr82ysGdn38SUlyqrf_UwczMyBW5nC6ARU77Kgfl72pViMawG0aok/https%3A%2F%2Fbioconductor.org%2Fpackages%2Fdevel%2Fbioc%2Fhtml%2Fmulticrispr.html>. A related question: the CI/CD feature during package submission (master branch push to github triggers build attempt on the BioC servers) was actually very useful, but I can understand that you don't provide this for accepted packages to keep the load on your servers manageable. What CI/CD setup would you recommend (from the perspective of being maximally relevant for BioC). Travis? Thank you for helping! Aditya ________________________________ From: Shepherd, Lori [Lori.Shepherd at RoswellPark.org] Sent: Thursday, June 11, 2020 6:18 PM To: Bhagwat, Aditya; bioc-devel at r-project.org<mailto:bioc-devel at r-project.org> Subject: Re: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it Newly accepted packages are added into devel only. They will be a release branch as soon as the next scheduled Bioconductor release occurs. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-bounces at r-project.org<mailto:bioc-devel-bounces at r-project.org>> on behalf of Bhagwat, Aditya <Aditya.Bhagwat at mpi-bn.mpg.de<mailto:Aditya.Bhagwat at mpi-bn.mpg.de>> Sent: Thursday, June 11, 2020 12:15 PM To: bioc-devel at r-project.org<mailto:bioc-devel at r-project.org> <bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>> Subject: [Bioc-devel] fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it Dear Bioc Core, Thank you for accepting multicrispr on BioC<https://secure-web.cisco.com/1Y5aHfpLYwxVOA6Cj3bxEVuenqe6D8K2mYcqfAmwz6Fi6eyzj9ZL85VY2H0PZrFkpkFbO_w5JIWkUIDUjYSFPRsOWFmm_pDVgAJBRmO1uCb9LgJF5mh_FUnj2zUAPVJbk9HPy9BzwWn8pHCQOyHp9T_xfBrl1tFAkt7ZrYGptTyl0u1HYKnjYTmc-l5OjWQoyG3bIOTfYV1lc_cNItl7XwfDdyx4NkyoksEKEZfvA_2PlrkF8te0_49BJxVw47JVUK1Tjj-F-nuVxx2gAF3nDoPiQl1f5bOcc1zKgTYrgh1x2so6QfUHbqu_M7rEFHBQ9OFgeC30W0bOLRd4YEfu5XA/https%3A%2F%2Fgithub.com%2FBioconductor%2FContributions%2Fissues%2F1486>. I was going through the instructions on how to sync existing repositories<https://secure-web.cisco.com/1Xe9o5uhiFHsFKbmSBGQuqpBQbV-hql0tIGwW7TBNOQyRT67-xND5I-TSMoVXC2pXrgYxNb-5-sPbt5rOOjgawuDHJv7Y7yJFhVBV51tIj9xSy4Nk-GlEPEtV_1RG79MZbJ5d7LZ82dFp-BZmzPwrjKRAib7x8vphKaRW4qc_q6EIPMOrs282w4JaJxxRd-Jsxi6X_gw41rihMwaTa84WG62bi5im6SkX3hoyYq6qwitZdOiUeNN9FYJHB_VREnXcM16haB2xWae5BwiJJdtuP3Y1T-wW9L0HnO14_bhkOd794PH_lDa0cdICiv2NVJVoaSyYZK93SX5T2wpON1FgO_xhi1D5Z45H163FH75DerE/https%3A%2F%2Fbioconductor.org%2Fdevelopers%2Fhow-to%2Fgit%2Fsync-existing-repositories%2F>. All instructions up to point 9 work. Point 10, however fails, when creating the release branch: $ git checkout -b RELEASE_3_11 upstream/RELEASE_3_11 fatal: 'upstream/RELEASE_3_11' is not a commit and a branch 'RELEASE_3_11' cannot be created from it I wonder what I am doing wrong (seems like it should be something trivial, but I am not seeing it). Thank you for helping! Aditya [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org<mailto:Bioc-devel at r-project.org> mailing list https://secure-web.cisco.com/1dD24Fmu9gjmLPt6fORbREp3nCtIbsBT2Cqq9kX7NWPdnENsspbw0obk03UOZoUcHCDqDJWOZ5LqGeBEON5GsAOUcxgLaOIPiHdXbUkUYRI0JJpGgw9gxTbtdNb5tOM-Tcn6oSrOEmurcRssmw-W7BYV3C5hGKbLQi-Ykb7JeZLS-9VgZSsSCiVcRcC12WqKjR0OmBY6UK1bpRAs--1MCuX1a-WnFzbBEIcdBgOf2IDH6hYDxiFUmniKrXYc52F2MYBhX1qSx1zfJDqxP1bPI1d_4A9MTbwsAuGI9764_XDo3xrBlhnd75yY6a0PaYCvwifkIOcQ2KhxLc0TWUamlFg/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. 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