[Bioc-devel] How to recreate R CMD BUILD environment in interactive session?

I can reproduce the error with

clusterExperiment/vignettes master$ R_DEFAULT_PACKAGES= LC_COLLATE=C R -f clusterExperimentTutorial.R

leading to

## ----recallRSEC------------------------------------------------------------
rsecFluidigm<-RSEC(rsecFluidigm,isCount=TRUE,combineProportion=0.6,mergeMethod="JC",mergeCutoff=0.05)

Error in validObject(.Object) :
 invalid class "ClusterExperiment" object: merge_nodeMerge must be data.frame with 4 columns and column names equal to: 'Node','Contrast','isMerged','mergeClusterId'
Calls: RSEC ... .local -> new -> initialize -> initialize -> validObject
Execution halted

and then for work inside R


clusterExperiment/vignettes$ R_DEFAULT_PACKAGES= LC_COLLATE=C R
Bioconductor version 3.6 (BiocInstaller 1.27.7), ?biocLite for help

source("clusterExperimentTutorial.R", echo=TRUE, max=Inf)

Does that set you down the right path?

Martin