Message-ID: <2092081713.7363211403105717836.JavaMail.actor@webmail14>
Date: 2014-06-18T15:35:17Z
From: jarod_v6 at libero.it
Subject: [Bioc-devel] Problem on Installation of DEseq2
> >I can't install this DESEq2 on the RHEL 5.5 server:
> >
> >* installing *source* package ???RcppArmadillo??? ...
> >** package ???RcppArmadillo??? successfully unpacked and MD5 sums
checked
> >* checking LAPACK_LIBS: divide-and-conquer complex SVD unavailable via
R-
> >supplied LAPACK
> >* divide-and-conquer algorithm for complex SVD will be redirected to
default
> >** libs
> >g++ -I/illumina/software/PROG/R302/lib64/R/include -DNDEBUG -
> >I/usr/local/include -I"
> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include" -I..
/inst/include
> -
> >fpic -g -O2 -c RcppArmadillo.cpp -o RcppArmadillo.o
> >In file included from ../inst/include/armadillo:42,
> > from ../inst/include/RcppArmadilloForward.h:37,
> > from ../inst/include/RcppArmadillo.h:30,
> > from RcppArmadillo.cpp:22:
> >../inst/include/armadillo_bits/compiler_setup.hpp:119:6: error: #error
"***
> >Need a newer compiler ***"
> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h:
In
> >member function ???void Rcpp::Date::update_tm()???:
> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h:
108:
>
>- Ignored:
> >warning: converting to ???time_t??? from ???double???
> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h:
In
> >function ???Rcpp::Date Rcpp::operator+(const Rcpp::Date&, int)???:
> >/illumina/software/PROG/R302/lib64/R/library/Rcpp/include/Rcpp/Date.h:
139:
> >warning: converting to ???time_t??? from ???double???
> >make: *** [RcppArmadillo.o] Error 1
> >ERROR: compilation failed for package ???RcppArmadillo???
> >* removing ???/illumina/software/PROG/R302/lib64/R/library/RcppArmadillo?
??
> >* restoring previous
> >???/illumina/software/PROG/R302/lib64/R/library/RcppArmadillo???
> >
> >The downloaded source packages are in
> > ???/tmp/Rtmp30ZzKT/downloaded_packages???
> >Updating HTML index of packages in '.Library'
> >Making 'packages.html' ... done
> >Warning messages:
> >1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
> > installation of package ???RcppArmadillo??? had non-zero exit status
> >2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
> > installation of package ???DESeq2??? had non-zero exit status
> >3: In install.packages(update[instlib == l, "Package"], l, contriburl
> >
> >sessionInfo()
> >R version 3.0.2 (2013-09-25)
> >Platform: x86_64-unknown-linux-gnu (64-bit)
> >
> >locale:
> > [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
> > [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
> > [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
> > [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
> > [9] LC_ADDRESS=C LC_TELEPHONE=C
> >[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
> >
> >attached base packages:
> >[1] stats graphics grDevices utils datasets methods
base
> >
> >other attached packages:
> >[1] BiocInstaller_1.12.1
> >
> >loaded via a namespace (and not attached):
> >[1] tools_3.0.
> >Any Idea how can resolve?
> >
> >
>
>
>
>- Done.
>
>