installed successfully with R 2.15.1, note the BiocInstaller version which
is different from yours. Please upgrade and try again with full sessionInfo
if you have further problems
BioC_mirror: http://bioconductor.org
Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version 2.15.
Installing package(s) 'KEGGprofile'
trying URL
'http://bioconductor.org/packages/2.11/bioc/src/contrib/KEGGprofile_1.0.0.tar.gz'
Content type 'application/x-gzip' length 431905 bytes (421 Kb)
opened URL
==================================================
downloaded 421 Kb
* installing *source* package 'KEGGprofile' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'KEGGprofile.Rnw' using 'latin-9'
** testing if installed package can be loaded
* DONE (KEGGprofile)
On Thu, Nov 1, 2012 at 1:31 AM, slzhao <slzhao at sibs.ac.cn> wrote:
Hi all,
I am the author of the package KEGGprofile. Some persons told me that
they can't install KEGGprofile package via R code:
source("http://bioconductor.org/biocLite.R");
biocLite("KEGGprofile");
The result was:
BioC_mirror: http://bioconductor.org
Using R version 2.15, BiocInstaller version 1.4.9.
Installing package(s) 'KEGGprofile'
Warning message:
package?KEGGprofile?is not available (for R version 2.15.1)
I have tested it in R 2.15.1 and R 2.14.0 and found it was true. I
have also tested some other packages in a smilar way and they can be
installed.
So I downloaded the Zip file for KEGGprofile package from the website
and installed it local. It can be installed but when I use
library(KEGGprofile), The result was:
Error in eval(expr, envir, enclos) :
could not find function ".getNamespace"
In addition: Warning message:
package ?KEGGprofile? was built under R version 2.16.0
Error : unable to load R code in package ?KEGGprofile?
Error: package/namespace load failed for ?KEGGprofile?
Then I used the Zip file build by myself. And it was completely OK in
installation and running.
I have also checked the checkResults page for the package, and the report
is OK.
Thank you!
Shilin Zhao