[Bioc-devel] EXTERNAL: [BULK] genefu Warning
Hi Christopher, It would be a good idea to remove the `LazyData: yes` from the DESCRIPTION. https://bioconductor.org/developers/package-guidelines/#description <https://bioconductor.org/developers/package-guidelines/#description> One that is set make sure there is no pollution in function environments e.g., `sbt.model=scmod1.robust` in `R/genius.R`. Create an empty data environment where you can load package data for the function to use with `new.env(parent = emptyenv())`. Best, Marcel
On 5/18/21 6:21 PM, Eeles, Christopher wrote:
Hello Bioc Core Team, I just noticed that one of our lab package, genefu, has a WARNING on devel for all build machines. The warning is: LazyData DB of 5.0 MB without LazyDataCompression set See ?1.1.6 of 'Writing R Extensions' I wanted to make sure that this will not affect the inclusion of genefu in the 3.13 release. I have already started researching the issue and will push a fix as soon as the release is complete on Thursday. --- Christopher Eeles Software Developer BHK Laboratory<https://nam05.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.bhklab.ca%2F&data=02%7C01%7Ctao.qing%40yale.edu%7Ce130a2d3267b46a945ab08d79f7660ad%7Cdd8cbebb21394df8b4114e3e87abeb5c%7C0%7C0%7C637153203084194682&sdata=nGXPfLnlbcaLQdDOHFDmp4lZ7lD9H29uFeVCAqjT9Ds%3D&reserved=0> Princess Margaret Cancer Centre<https://nam05.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.pmgenomics.ca%2Fpmgenomics%2F&data=02%7C01%7Ctao.qing%40yale.edu%7Ce130a2d3267b46a945ab08d79f7660ad%7Cdd8cbebb21394df8b4114e3e87abeb5c%7C0%7C0%7C637153203084194682&sdata=b2ZjA%2FPDKjTZmAWGbnQAY1SjVtCDQGQmXu2Thz%2FXQkI%3D&reserved=0> University Health Network<https://nam05.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.uhn.ca%2F&data=02%7C01%7Ctao.qing%40yale.edu%7Ce130a2d3267b46a945ab08d79f7660ad%7Cdd8cbebb21394df8b4114e3e87abeb5c%7C0%7C0%7C637153203084204675&sdata=NH1nVdRr9SsFOtMYhC%2BaXpdZiC7Nm%2BaUt37NvDWBfCg%3D&reserved=0> Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this e-mail in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this e-mail may not be that of the organization. If you feel you have received an email from UHN of a commercial nature and would like to be removed from the sender's mailing list please do one of the following: (1) Follow any unsubscribe process the sender has included in their email (2) Where no unsubscribe process has been included, reply to the sender and type "unsubscribe" in the subject line. If you require additional information please go to our UHN Newsletters and Mailing Lists page. Please note that we are unable to automatically unsubscribe individuals from all UHN mailing lists. Patient Consent for Email: UHN patients may provide their consent to communicate with UHN about their care using email. All electronic communication carries some risk. Please visit our website here<https://www.uhn.ca/PatientsFamilies/Patient_Safety_Advocacy/Privacy/Documents/Email_consent_and_safety.pdf> to learn about the risks of electronic communication and how to protect your privacy. You may withdraw your consent to receive emails from UHN at any time. Please contact your care provider, if you do not wish to receive emails from UHN. [[alternative HTML version deleted]]
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---
Marcel Ramos
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Dept. of Biostatistics & Bioinformatics
Elm St. & Carlton St.
Buffalo, New York 14263
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