[Bioc-devel] FW: Java version issue on Bioconductor test platform
Dear Herve, Thank you very much for recommending the openxlsx package. It looks like that it also supports multiple sheets per file. I?ll try replacing xlsx with openxlsx package for all platforms. Best regards, Arman From: Pages, Herve<mailto:hpages at fredhutch.org> Sent: Thursday, September 10, 2020 21:52 To: Arman Shahrisa<mailto:shahrisa.arman at hotmail.com>; bioc-devel<mailto:bioc-devel at r-project.org> Subject: Re: FW: [Bioc-devel] Java version issue on Bioconductor test platform Hi Arman, Sure, if xlsx is broken and won't be fixed, use something else. Maybe try openxlsx? Similar to xlsx but doesn't require Java: https://CRAN.R-project.org/package=openxlsx But why would you use something else on Mac only? It's easier from a maintenance point of view if you use the same code on all platforms, whenever possible. Best, H.
On 9/9/20 11:06, Arman Shahrisa wrote:
Hi to all, I have sent several emails to the maintainer of ?xlsx? package but unfortunately, he is unresponsive. Am I allowed to use an alternative package for exporting data only for mac users? Best regards, Arman *From: *Arman Shahrisa <mailto:shahrisa.arman at hotmail.com> *Sent: *Thursday, September 3, 2020 10:59 *To: *Pages, Herve <mailto:hpages at fredhutch.org>; bioc-devel <mailto:bioc-devel at r-project.org> *Subject: *RE: [Bioc-devel] Java version issue on Bioconductor test platform Hi Herve, The last response in the previous topic suggested that the maintainer has already fixed the problem on GitHub but not CRAN. https://stat.ethz.ch/pipermail/bioc-devel/2020-May/016791.html <https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_pipermail_bioc-2Ddevel_2020-2DMay_016791.html&d=DwMGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=9S9mNopR4XSbGqAMmUModsQcHeIRaBXsJKTU1m2Rf0M&s=d-jhcrcDtaq6GiLWUPPiebqAN_Z2spl69fFwkzz3ERs&e=> This is from May and the problem still persists. I?ll try contacting the maintainer of xlsx. Best regards, Arman *From: *Pages, Herve <mailto:hpages at fredhutch.org> *Sent: *Thursday, September 3, 2020 01:06 *To: *Arman Shahrisa <mailto:shahrisa.arman at hotmail.com>; bioc-devel <mailto:bioc-devel at r-project.org> *Subject: *Re: [Bioc-devel] Java version issue on Bioconductor test platform Hi Arman, You already asked about this in May: https://stat.ethz.ch/pipermail/bioc-devel/2020-May/016788.html <https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_pipermail_bioc-2Ddevel_2020-2DMay_016788.html&d=DwMGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=9S9mNopR4XSbGqAMmUModsQcHeIRaBXsJKTU1m2Rf0M&s=Ojb8pDAdLSGLFTQfhBx0i20SzBueTg8Owpd3LiW5Wts&e=> Have you followed up with the xlsx maintainers as suggested by Llu?s? Cheers, H. On 8/29/20 11:12, Arman Shahrisa wrote:
> Hi to all, > > I?m maintainer of the package ?cbaf?. I have been monitoring reports
for my package for months. I know there were some issues with mac server. However, it seems that error shown from mac server regarding my package is caused by some incompatible java application installed on Bioconductor server. I would be grateful if you would kindly check this issue for me.
> > Best wishes, > Arman > > > [[alternative HTML version deleted]] > > > _______________________________________________ > Bioc-devel at r-project.org mailing list >
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-- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319
-- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319