[Bioc-devel] macOS auto build fails with "graphics API version mismatch"

Hi Herv?,

Now all builds pass ? thanks for your help!

As you mention we have a warning to iron out in the documentation and 
we?ll also sneak in the other fixes to the documentation you are 
kindly suggesting.

Just to be sure, if I want these changes to appear in release 3.15 I 
just need to push them to my Bioconductor master branch and don?t need 
to create a RELEASE_3_15 branch, since that will automatically branch 
off the latest master. Is this correct?

Also, I don?t need to do anything else for this build to be propagated 
to the users in version 3.14 since that happens automatically when the 
build passes. Is this right?

Best,

Matteo

*From: *Herv? Pag?s <hpages.on.github at gmail.com>
*Date: *Tuesday, 22 March 2022 at 21.23
*To: *Matteo Tiberti <tiberti at cancer.dk>, bioc-devel at r-project.org 
<bioc-devel at r-project.org>
*Subject: *Re: [Bioc-devel] macOS auto build fails with "graphics API 
version mismatch"

Hi Matteo,

On 21/03/2022 03:53, Matteo Tiberti wrote:

Dear all,

I'm looking into the build failure of our MoonlightR package on 

merida1 (macOS). It fails because vignettes fail to compile:

Quitting from lines 532-546 (Moonlight.Rmd)
Error: processing vignette 'Moonlight.Rmd' failed with diagnostics:
Graphics API version mismatch
--- failed re-building ?Moonlight.Rmd?

The error refers to a function call that is supposed to generate an 

image file for the vignette using ggsave.

I have installed R-devel on macOS 10.15.7 and I am trying to 

replicate the error, but it seems to build correctly on my system. 
I've done some searching and I suspect that packages that use the 
graphics API need to be recompiled on the build system since the API 
version changed with R 4.2. Do you think this might be the case and, 
if so, should I wait for this to be fixed on merida?

This should have been taken care of now. Let us know if you still see
this error on tomorrow's report.

Notice that MoonlightR also doesn't build on Windows now because of 

an unrelated issue with a dependency

Looks like it's gone on today's report :-)

BTW can you please remove MoonlightR/vignettes/Moonlight.html from the
git repo of your package? The HTML vignette is automatically generated
by 'R CMD build' and added to the resulting source tarball. As such it
should not be pre-compiled and included in the package source tree.

FWIW I get the following problem when running 'R CMD Stangle' on the
markdown vignette:

?? hpages at spectre:~/MoonlightR/vignettes$ R CMD Stangle Moonlight.Rmd
?? Warning: The closing backticks on line 669 (" ```") in Moonlight.Rmd
do not match the opening backticks "```" on line 667. You are
recommended to fix either the opening or closing delimiter of the code
chunk to use exactly the same numbers of backticks and same level of
indentation (or blockquote).
Output file:? Moonlight.R

Maybe you want to look into this.

Thanks,

H.

Thank you,

Matteo Tiberti

Danish Cancer Society
Strandboulevarden 49
DK-2100 Copenhagen
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-- 
Herv? Pag?s

Bioconductor Core Team
hpages.on.github at gmail.com