[Bioc-devel] bioconductor/metabolomics Docker image available

From: "Steffen Neumann" <sneumann at ipb-halle.de>
To: "Dan Tenenbaum" <dtenenba at fredhutch.org>
Cc: "bioc-devel" <bioc-devel at r-project.org>
Sent: Wednesday, July 27, 2016 5:02:22 AM
Subject: bioconductor/metabolomics Docker image available

Hi Dan and BioC community!

I now cleaned up my?Bioconductor/bioc_docker
and opened a pull request to add a Metabolomics
Bioconductor [1].

This works on our Jenkins installation, where I regularly
build the devel_metabolomics [2] and release [3] images.

The image for the previous devel version (BioC-3.3) does build,
but the image for the old release version (BioC-3.2) does not,
due to the mzR issue on new gcc we talked about a few months ago.

If you want, I can send a second pull request
and modify?bioc_docker/config.yml to use the current
versions 3.3 for release, and 3.4 for devel.

A more general question, what is the current docker strategy
for Bioconductor. Are they build/tested on a regular basis ?

Are failure reported to package maintainers, or should they ?

Should the docker images be part of the regular checkResults report ?

Yours,
Steffen

[1]?https://github.com/Bioconductor/bioc_docker/pull/4
[2] http://phenomenal-h2020.eu/jenkins/job/bioc_docker_devel_metabolomics/
[3]?http://phenomenal-h2020.eu/jenkins/job/bioc_docker_release_metabolomics


--
IPB Halle????????????????????AG Massenspektrometrie & Bioinformatik
Dr. Steffen Neumann??????????http://www.IPB-Halle.DE
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