[Bioc-devel] BioC packages - profileplyr
Is the failure in your code or in the vignettes?? I ran into a situation where I was @importFrom-ing function and my devtools::check() was failing because the @examples code wasn't seeing the imported functions.? This actually makes sense as a behavior because examples should act like the user is running them, not like they're running inside the package.
On 7/12/2019 6:50 PM, Doug Barrows wrote:
Hi, Our package - profileplyr - is failing on the development branch with an error when it tries to subset a RangedSummarizedExperiment object with brackets ([ ]). Within our package we build a slightly modified RangedSummarizedExperiment object with a few additional slots and features, and often will subset this object using the brackets in both the functions and in the vignette. When trying to subset (e.g. object[1:10, 1:10]) we get the error "Error: $ operator not defined for this S4 class". This is a new error, so I wanted to check if this kind of subsetting functionality is no longer supported with RangedSummarizedExperiment objects in general, or whether this is likely something specific to our package. Any insight you may have would be greatly appreciated - thanks! Bestm Doug [[alternative HTML version deleted]]
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