[Bioc-devel] Installing Geoquery on R version 2.13.1
Hi, As shown here: http://www.bioconductor.org/install/ The easiest way to install bioconductor packages is via `biocLite`. Just: R> source("http://bioconductor.org/biocLite.R") R> biocLite('GEOquery') This will install the appropriate version of the bioconductor packages for your version of R. Also, if you're not "stuck" on R-2.13.x for any particular reason, you might as well update to the latest/greatest, which is R-2.14.0, then do the biocLite dance. -steve
On Mon, Nov 28, 2011 at 11:05 PM, Radhika Malik <radhika1990 at gmail.com> wrote:
Hi,
I'm a new developer and am trying to install geoquery on R version
2.13.1 on Mac OS X 10.6.8. I got the binary GEOquery_1.7.2.tgz but am
unable to install it
1. I have tried R CMD INSTALL /Users/RM/Desktop/GEOquery_1.7.2.tgz
When I do library('GEOquery'), this gives me the error Error: package
'GEOquery' was built before R 2.10.0: please re-install it
2. I tried re-installing by running remove.packages('GEOquery')
followed by install.packages('GEOquery') but this gives me the warning
Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
?package ?GEOquery? is not available (for R version 2.13.1)
and then when I try to do library('GEOquery') it again says Error:
package 'GEOquery' was built before R 2.10.0: please re-install it
How can I load the library? Any help would be greatly appreciated;
I've been trying to just install this for several hours now..
Thanks,
Radhika
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Steve Lianoglou Graduate Student: Computational Systems Biology ?| Memorial Sloan-Kettering Cancer Center ?| Weill Medical College of Cornell University Contact Info: http://cbio.mskcc.org/~lianos/contact