Hard to say. If you followed all steps at
https://bioconductor.org/developers/how-to/git/push-to-github-bioc/
with no errors the changes should have been pushed to the repo on
git.bioconductor.org.
When I do a `git log` on the repo from git at git.bioconductor.org the last
commit I see was the 3.6 version bump:
~/psygenet2r >git log
commit 9dab8da2221555986e12f3ed928385718bd79e4d (HEAD -> master,
origin/master, origin/HEAD)
Author: Herv? Pag?s <hpages at fredhutch.org> <hpages at fredhutch.org>
Date: Mon Oct 30 12:54:19 2017 -0400
bump x.y.z versions to odd y after creation of RELEASE_3_6 branch
You'll have to do some troubleshooting to figure out why the changes
weren't pushed. There are a number of things you can try e.g., Did the
change make it to your GitHub repo? Are the remotes (still) correct? What
does `git log` say? Try checking out a clean copy of psygenet2r from
git at git.bioconductor, making a small change like a version bump and push.
Was that successful? You don't have to wait until the build report posts to
discover if a push to git at git.bioconductor.org was successful. A
successful push is immediately evident in the logs.
Valerie
On 03/06/2018 07:47 AM, alba gutierrez wrote:
Dear Valerie,
Sorry again, I still have problems.
I updated it yesterday, I was able to do all the steps without problems
but today I was checking the Bioconductor devel and no update has been
registered.
Last Changed Date: 2017-10-30 12:54:19 -0500 (Mon, 30 Oct 2017)
How should I proceed?
What I did was following all these steps, and run without problems.
http://bioconductor.org/developers/how-to/git/push-to-github-bioc/
Thanks a sorry again,
Best,
Alba
2018-03-05 16:08 GMT-05:00 alba gutierrez <alba.gutierrez at upf.edu>:
Dear Valerie,
Thank you so much for all your help.
I have configured my config file to point the key, there was a
misspelling problem.
I think I have updated correctly to Bioconductor know.
Thanks for all your help,
Best,
Alba
2018-03-05 8:47 GMT-05:00 Obenchain, Valerie <
Valerie.Obenchain at roswellpark.org>:
Please remember to cc bioc-devel to keep the conversation on the list.
This is the key we have on file:
ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQCrqcl4CgcR0SfE1Q7Jg+xuxkNlyi4J
gTz6dtgDHH4uFStB34puUKSTBwlEmVR269XTB1uNVAmBWQIxZQtFybGFMdS6
fyA7A9mLeEvgJFIJP7wgXYh4ekzF72Ya/1cOLw4GJyPM6ImNfYC7GRJ8fVkd
4JtoiRSRaxJAkd0HY7JUAjexiBq2XAvUq+lY52E8H9ShZae8lvxUK2zFWZHp
PEjHgXm5QZlzbUVYXlUUe09OaeKLAJz6cDMI4HLhKrtKdsRTyo05keU2P9Hu
rsw9jSOp4ODAbuTN+LGTvxspVeLDzeJ4mlpPIzkBEH5gSyosZqAN5OtPuaZk6geSywTl6KM/
Have you configured your .ssh/config to point to this key? See #15 here:
https://bioconductor.org/developers/how-to/git/faq/
Valerie
On 03/03/2018 02:22 PM, alba gutierrez wrote:
Dear Valerie,
Thanks for all your help.
I have solved the upstream issue, so know when I do: git remove -v I get
the next:
*origin https://github.com/aGutierrezSacristan/psygenet2r
<https://github.com/aGutierrezSacristan/psygenet2r> (fetch) *
*origin https://github.com/aGutierrezSacristan/psygenet2r
<https://github.com/aGutierrezSacristan/psygenet2r> (push)*
*upstream git at git.bioconductor.org:packages/psygenet2r.git
<git at git.bioconductor.org:packages/psygenet2r.git> (fetch)*
*upstream git at git.bioconductor.org:packages/psygenet2r.git
<git at git.bioconductor.org:packages/psygenet2r.git> (push)*
*I have done a minimal change in the vignette, updating my email account
in order to try to do a push. I can do the git push origin master without
problems but I still cannot do the git fetch upstream, that is what I
should run to update the package in Bioconductor. I still get the same
error message. *
*git at git.bioconductor.org <git at git.bioconductor.org>: Permission denied
(publickey).*
* fatal: Could not read from remote repository. Please make sure you
have the correct access rights and the repository exists. *I am doing
my best but I do not know how to solve this.
Sorry again.
Best,
Alba
2018-03-03 17:03 GMT-05:00 Obenchain, Valerie <
Valerie.Obenchain at roswellpark.org>:
On 03/03/2018 01:41 PM, alba gutierrez wrote:
Dear Valerie,
I have one additional question.
Although I appear as maintainer the package has two authors, and my
colleague Carles Hernandez-Ferrer, the other co-author is the one that used
to do all the updates.
Is there any possibility to add him as maintainer and that both of us
could update the package whenever needed? It would help a lot.
Yes he can be added but you need to make a request on bioc_devel.
Briefly explain why they need access. If he has not already, Carles will
need to submit ssh keys via the google doc.
Valerie
Best,
Alba
2018-03-03 9:31 GMT-05:00 alba gutierrez <alba.gutierrez at upf.edu>:
Dear Valerie,
Sorry for my delay answering.
Thank you for your help.
There is any other documentation that could help me to do that? I do
not know how to change the upstream pointing to my package instead of
Biocgenerics.
Thank you so much for all your help!
Best,
Alba
2018-02-26 10:44 GMT-05:00 Obenchain, Valerie <
Valerie.Obenchain at roswellpark.org>:
Hi Alba,
We have one key for a.gutierrez-sacristan:
ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAABAQCrqcl4CgcR0SfE1Q7J...VeLDzeJ4m
lpPIzkBEH5gSyosZqAN5OtPuaZk6geSywTl6KM/
If this is the key you're using you should have access. What is the
output of
git remote -v
Valerie
On 02/23/2018 09:16 AM, alba gutierrez wrote:
Dear all,
I am writing to you because I have some problems to update my
package psygenet2r. After submitting my ssh-key and waiting to have the
confirmation email I have been following the instructions herehttp://bioconductor.org/developers/how-to/git/maintain-github-bioc/
All steps work without any problem and as expected according to the web.
But in step 7 I get this error:
"
git fetch upstream
git at git.bioconductor.org
: Permission denied (publickey).
fatal: Could not read from remote repository.
"
Could anyone help me with that?
Thanks a lot,
Best,
Alba
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