[Bioc-devel] Dependencies error on Windows in long tests
Salut Pierrick, Please give it one more week. We updated R to 4.1.2 on the release build machines last week and riesling1 was the last one to receive the update. For riesling1 this update was actually made only a few hours before the Long Tests builds, with the unfortunate consequence that not all deps got a chance to get installed on the machine before those builds started. This is just bad timing and I'm sorry for the inconvenience. Cheers, H.
On 14/11/2021 23:03, Pierrick Roger wrote:
Hi, The long tests of all my packages (biodb, biodbChebi, biodbHmdb, BiodbKegg, biodbLipidmaps, biodbUniprot) are failing on Windows platform (riesling1). Here is the error for `biodb`: ``` * checking package dependencies ... ERROR Packages required but not available: 'BiocFileCache', 'R6', 'RSQLite', 'Rcpp', 'XML', 'chk', 'jsonlite', 'lgr', 'lifecycle', 'openssl', 'plyr', 'progress', 'rappdirs', 'stringr', 'withr', 'yaml', 'testthat' Packages suggested but not available: 'BiocStyle', 'roxygen2', 'devtools', 'knitr', 'rmarkdown', 'covr', 'xml2', 'git2r' ``` See the following pages: * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodb/ * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbHmdb/ * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbChebi/ * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbKegg/ * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbUniprot/ * http://bioconductor.org/checkResults/release/bioc-longtests-LATEST/biodbLipidmaps/ Does anyone have an idea of what is happening?
Herv? Pag?s Bioconductor Core Team hpages.on.github at gmail.com