[Bioc-devel] need advice on how to fix build error in windows
It's fine in today's build report. Dan
On April 8, 2016 1:31:24 PM PDT, Krithika Bhuvaneshwar <kb472 at georgetown.edu> wrote:
Dear Biconductor team, We are developers of newly accepted Bioconductor package CINdex. Our package is meant for DNA copy number data analysis, and the example data we use is from Affymetrix SNP 6.0 , so we use 'pd.genomewidesnp.6' annotation package for Affymetrix SNP 6.0 in our vignette. Our package built without errors before the Windows tool chain error started. Now the error is "there is no package called 'pd.genomewidesnp.6'. Execution halted". We see that package 'pd.genomewidesnp.6' is not present in BioC 3.3 devel. So will the 'pd.genomewidesnp.6' from Bio C 3.2 be carried over to the production version ? My question is: how do we go about resolving this error, which is dependent on another package ? Will fixing the windows tool chain fix the problem, in which case we just wait and watch ? We definitely want to have our package in BioC 3.3 release.. So any advice will help Thanks, Krithika
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