[Bioc-devel] Installing libsbml for rsbml on a mac?
Does this work for you? https://github.com/mythosil/homebrew-libsbml Michael On Fri, Apr 3, 2020 at 2:20 AM Martin Morgan <mtmorgan.bioc at gmail.com> wrote:
The INSTALL file for rsbml says ~/b/git/rsbml master$ cat INSTALL ... To build rsbml on the Mac, first install libsbml with: `brew install homebrew/science/libsbml`. but ~/b/git/rsbml master$ brew install homebrew/science/libsbml Error: homebrew/science was deprecated. This tap is now empty as all its formulae were migrated. If I download and build from source curl -O https://s3.amazonaws.com/linux-provisioning/libSBML-5.10.2-core-src.tar.gz tar xzf libSBML-5.10.2-core-src.tar.gz ./configure --enable-layout make make install when I install rsbml things go well enough until ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for ?rsbml?: .onLoad failed in loadNamespace() for 'rsbml', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/Users/ma38727/Library/Caches/pkgserver/library/78c7d37adb9cb6df9d8f1ec10fed882b/00LOCK-rsbml/00new/rsbml/libs/rsbml.so': dlopen(/Users/ma38727/Library/Caches/pkgserver/library/78c7d37adb9cb6df9d8f1ec10fed882b/00LOCK-rsbml/00new/rsbml/libs/rsbml.so, 6): Symbol not found: _ASTNode_isName Referenced from: /usr/local/lib/libsbml.5.dylib Expected in: flat namespace in /usr/local/lib/libsbml.5.dylib Error: loading failed Execution halted Any hints? Thanks, Martin
Michael Lawrence Senior Scientist, Bioinformatics and Computational Biology Genentech, A Member of the Roche Group Office +1 (650) 225-7760 michafla at gene.com Join Genentech on LinkedIn | Twitter | Facebook | Instagram | YouTube [[alternative HTML version deleted]]