[Bioc-devel] NEWS file hasn't been updated in the devel branch of package cbaf

Thu, Nov 16, 2017 10:00 AM

I didn't do anything and the file at the URL has not changed since last
time I checked it (more than 6h ago). As I said earlier it's not
uncommon to experience caching issues. It can help to restart your
browser to clear them. Downloading the file with wget or curl e.g.

   wget http://bioconductor.org/packages/devel/bioc/news/cbaf/NEWS

is also more likely to give you the current file. Unless the caching
problem is on the server side which is what happens sometimes with
Amazon CloudFront (in which case one needs to wait and re-try later).

Cheers,
H.

On 11/16/2017 09:49 AM, Arman Shahrisa wrote:

It wasn?t changed when I sent the previous email. But after 1 hour,

I noticed the change. The package was updated at Bioconductor website

yesterday. It is not common for a single file to be corrected automatically

after more than 24 hours has past. I thought you might have altered it

manually. Since the problem was solved, I didn?t send any further email.

Best regards,
Arman Shahrisa

------------------------------------------------------------------------
*From:* Herv? Pag?s <hpages at fredhutch.org>
*Sent:* Thursday, November 16, 2017 9:08:47 PM
*To:* Arman Shahrisa; bioc-devel
*Subject:* Re: [Bioc-devel] NEWS file hasn't been updated in the devel
branch of package cbaf
On 11/16/2017 05:15 AM, Arman Shahrisa wrote:

Hi Herv?,

I can still see the old NEWS file over there. Maybe you have mistakenly
opened

the stable branch (which is up to date and has no problem). My problem

is with the devel branch. Even the NEWS file has the version of older
package.

Maybe it is because of the error during package building. cbaf is not
available for

windows and mac os because of a few of dependent packages that are not
available

for R 3.5 yet.

http://bioconductor.org/packages/devel/bioc/news/cbaf/NEWS

<https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_packages_devel_bioc_news_cbaf_NEWS&d=DwMF-g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=amG6RXzpG9x2hkXJ5mOnBaCq_-6Yz9IYYd92sZfnJF4&s=hMdh0gP5TGFx9zPLaU5ukstGmYLWIf0njnsTKdSc7ck&e=>

The file at the above URL starts with

cbaf 1.1.2 - 2017-11-14
-------------------------

Isn't that the new file?

H.

http://bioconductor.org/packages/devel/bioc/src/contrib/cbaf_1.1.2.tar.gz <https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_packages_devel_bioc_src_contrib_cbaf-5F1.1.2.tar.gz&d=DwMF-g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=amG6RXzpG9x2hkXJ5mOnBaCq_-6Yz9IYYd92sZfnJF4&s=uLnrYn0qmkXy6d92SeDVcNYZdzXaW8uO3qdL6pWVJ3s&e=>
Best regards,
Arman Shahrisa

*From: *Herv? Pag?s <mailto:hpages at fredhutch.org>
*Sent: *Thursday, November 16, 2017 14:53
*To: *Arman Shahrisa <mailto:shahrisa.arman at hotmail.com>; bioc-devel
<mailto:bioc-devel at r-project.org>
*Subject: *Re: [Bioc-devel] NEWS file hasn't been updated in the devel
branch of package cbaf

Hi Arman,

On 11/15/2017 01:08 PM, Arman Shahrisa wrote:

Hi,

I?m the maintainer of package cbaf. The last version of cbaf in devel branch is
available at bioconductor.org. However, due to an unknown reason, the
NEWS file hasn?t been updated to the newest version (It is from the previous
version of cbaf). I manually downloaded the Source Package of cbaf from the
following bioconductor web page and it contains the correct NEWS file.

https://urldefense.proofpoint.com/v2/url?u=http-3A__bioconductor.org_packages_devel_bioc_html_cbaf.html&d=DwIFaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=btyTSHdxI_K--g8D_jB6Sg_h7_06w1StseJhSqwekZ4&s=jzgj9FyzhsLlsL4CQ2QC5gK7tY6mNrGrG2UZKJKF1OE&e=

AFAICT the NEWS file on this page is identical to the one in cbaf 1.1.2.

FYI our website is served via Amazon CloudFront and there are sometimes
delay/caching issues. I'm frequently hit by those.

Cheers,
H.

Best regards,
Arman Shahrisa


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Herv? Pag?s

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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[Bioc-devel] NEWS file hasn't been updated in the devel branch of package cbaf

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