[Bioc-devel] update packages not working

Seth,

Today the warning message again appeared, but shortly thereafter I was
prompted to update a host of BioC packages. So, I think the warning is a
bug, but not one that prevents the updates from taking place.

Mark

Mark W. Kimpel MD 

 

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-----Original Message-----
From: Seth Falcon [mailto:sfalcon at fhcrc.org] 
Sent: Tuesday, January 23, 2007 9:59 AM
To: Kimpel, Mark William
Cc: Seth Falcon; bioc-devel at stat.math.ethz.ch
Subject: Re: [Bioc-devel] update packages not working

"Kimpel, Mark William" <mkimpel at iupui.edu> writes:

Unless someone else has something to add, let's just drop this for
now.

Sure.

My real problem is that I am not sure if the update packages code is
working in R 2.5.0. Is the warning message itself a bug or is the

update

not working? So far I haven't been prompted to enter "y" to update a
BioC package, whereas I have for CRAN packages.

The warning message you posted should not prevent updates, but it is
difficult for me to tell if something else is going on.

+ seth