[Bioc-devel] .First.lib error in beadarray
Hi all,
My package does not seem to like Solaris at all :( Now I am getting the
following build ERROR
"Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library
'/loc/biocbuild/1.9d/Rpacks/beadarray.Rcheck/beadarray/libs/beadarray.so':
ld.so.1: R: fatal: relocation error: file
/loc/biocbuild/1.9d/Rpacks/beadarray.Rcheck/beadarray/libs/beadarray.so:
symbol log2: referenced symbol not found Error: package/namespace load
failed for 'beadarray'"
Can anyone advise on this please? Is it another problem with the version of
R on Solaris?
Thanks in advance,
Mark
On Sep 15 2006, Seth Falcon wrote:
Hi Mark, Sorry for the delay in response. Mark Dunning <md392 at cam.ac.uk> writes:
Hi all,
Apologies if this is a basic question, but I am seeing the following
error in the 1.9 Check report for beadarray on Solaris
Error: .First.lib failed for 'beadarray'
Call sequence:
2: stop(gettextf(".First.lib failed for '%s'", libraryPkgName(package)),
domain = NA)
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose
= FALSE)
Execution halted
See section 'Generic functions and methods' of the 'Writing R
Extensions'
manual.
Full details are here:
http://bioconductor.org/checkResults/1.9/churchill-beadarray-
checksrc.html
I'm quite new to development, so unfortunately this message means
little to me and it's quite puzzling that it appears on Solaris and
no other machines? Would someone be able to give some pointers how to
go about fixing the error?
The Solaris machine does not yet have up-to-date version of R alpha. Let's ignore this until it does and go from there. But thank you for keeping an eye on the check report of your package and posting questions. + seth
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