[Bioc-devel] [BioC] cummeRbund installation Error

Hi,

On Sun, Aug 11, 2013 at 11:44 PM, Sridhar Srinivasan
Dear R Developers,

I am trying to install cummeRbund library in my R latest version 3

i tried giving

source("http://bioconductor.org/biocLite.R")
    biocLite("cummeRbund")

Can you send the FULL output of this biocLite() command?
My guess is that a clue is buried in there. Probably a missing system
dependency like xml2 or libcurl.
On ubuntu you can fix this with
sudo apt-get install libxml2-dev libcurl-dev

Dan
After installing some package it returned with the Warning as

Warning messages:
1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ?RCurl? had non-zero exit status
2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ?biomaRt? had non-zero exit status
3: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ?rtracklayer? had non-zero exit status
4: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ?GenomicFeatures? had non-zero exit status
5: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ?biovizBase? had non-zero exit status
6: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ?Gviz? had non-zero exit status
7: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
  installation of package ?cummeRbund? had non-zero exit status

I searched in net regarding the issue.

I am sending the Out of  following commands
"

sessionInfo()
biocinstallRepos()

"

sessionInfo()
R version 3.0.1 (2013-05-16)
Platform: x86_64-redhat-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=C                 LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocInstaller_1.10.3

loaded via a namespace (and not attached):
[1] tools_3.0.1

biocinstallRepos()
                                               BioCsoft
           "http://bioconductor.org/packages/2.12/bioc"
                                                BioCann
"http://bioconductor.org/packages/2.12/data/annotation"
                                                BioCexp
"http://bioconductor.org/packages/2.12/data/experiment"
                                              BioCextra
          "http://bioconductor.org/packages/2.12/extra"
                                                   CRAN
                                "http://cran.fhcrc.org"

Could you please suggest on the same.

Thanks and Regards
Sridhar

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