[Bioc-devel] Few questions of maintaining a new bioconductor package

Hi Krutik,

Please try to activate now.

Best,

Nitesh
On Sep 28, 2020, at 6:28 AM, Krutik Patel (PGR) <K.Patel5 at newcastle.ac.uk> wrote:

Hi Nitesh,

Sorry for the late response. I have attempted what you suggested and several variations of the email address, and the same message returns.

k.patel5 at newcastle.ac.uk <mailto:k.patel5 at newcastle.ac.uk> is not associated with a maintainer of a Bioconductor package. Please check the spelling or contact bioc-devel at r-project.org <mailto:bioc-devel at r-project.org> for help.

Would it have been better if I had the email all lower case on submission?

The package is still in the devel stage, could this be the issue? 

Best,

Krutik
From: Nitesh Turaga <nturaga.bioc at gmail.com>
Sent: 24 September 2020 13:37
To: Krutik Patel (PGR) <K.Patel5 at newcastle.ac.uk>
Cc: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Few questions of maintaining a new bioconductor package

Everything on our end seems to be fine.

You have to first activate your account, and it might be case sensitive "K.Patel5 at newcastle.ac.uk <mailto:K.Patel5 at newcastle.ac.uk>? 

Try that.

Nitesh 

On Sep 19, 2020, at 4:46 AM, Krutik Patel (PGR) <K.Patel5 at newcastle.ac.uk <mailto:K.Patel5 at newcastle.ac.uk>> wrote:

Thank you for your advice Nitesh and Lori,

To expand on my issue with the Bioconductor Git Credentials site, when I try to activate my account, I get this message.

"k.patel5 at newcastle.ac.uk <mailto:k.patel5 at newcastle.ac.uk> is not associated with a maintainer of a Bioconductor package. Please check the spelling or contact bioc-devel at r-project.org <mailto:bioc-devel at r-project.org> for help."

?The email used here is the one which is attached to the package.

Best,

Krutik
________________________________
From: Shepherd, Lori <Lori.Shepherd at RoswellPark.org <mailto:Lori.Shepherd at RoswellPark.org>>
Sent: 18 September 2020 15:29
To: Krutik Patel (PGR) <K.Patel5 at newcastle.ac.uk <mailto:K.Patel5 at newcastle.ac.uk>>; bioc-devel at r-project.org <mailto:bioc-devel at r-project.org> <bioc-devel at r-project.org <mailto:bioc-devel at r-project.org>>
Subject: Re: Few questions of maintaining a new bioconductor package

? External sender. Take care when opening links or attachments. Do not provide your login details.

In Addition to Nitesh's comments:

Please do not push the version to 1.0.0 yourself.  This will be done at the time of release by the core team.  Continue to increment z of verion x.y.z.   For example 0.99.5.

For now,  you have to wait for a nightly build to view the results of the build/check.
http://bioconductor.org/checkResults/devel/bioc-LATEST/TimiRGeN/ <http://bioconductor.org/checkResults/devel/bioc-LATEST/TimiRGeN/>

Information on timing of build report and how long from push to viewing is summarized at the top of this page:
http://bioconductor.org/developers/how-to/troubleshoot-build-report/
Remember new builds will only register with a valid version bump.

You could always create a temporary directory and try checking the code out from git.bioconductor.org to see if the changes got successfully pushed to the server.  Or check out the RSS feed

Cheers,

Lori Shepherd

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Krutik Patel (PGR) <K.Patel5 at newcastle.ac.uk>
Sent: Friday, September 18, 2020 5:01 AM
To: bioc-devel at r-project.org <bioc-devel at r-project.org>
Subject: [Bioc-devel] Few questions of maintaining a new bioconductor package

Dear Bioconductor team,

I've recently had my package, TimiRGeN, accepted into bioconductor and have a few questions on the maintenance side of things.

1) I am ready to push a newer version of the package. Will I have to set the version to 1.0.0 now? Currently it is version 0.99.4158.

2) Once pushed, how can I check if the build has been successful? Will I have to wait and see if it has passed the nightly builds on build/checkResults? Or is there a faster method.

3) I would like to set up a new SSH key and use this to maintain my package. To do this I will need to activate my account on Bioconductor Git Credentials, but I do not remember setting up a password for this.

Any help in these matters would be great.

Best,
Krutik

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[Bioc-devel] Few questions of maintaining a new bioconductor package

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