[Bioc-devel] DMRcaller build error
Thank you for that Herve! I managed to figure out what the problem was. I was using a GRangesList constructor and, when validating the argument passed to the function, I was checking if the class was GRangesList instead of CompressedGRangesList. Radu
On Fri, Apr 27, 2018 at 8:11 PM, Herv? Pag?s <hpages at fredhutch.org> wrote:
Hi Radu, DMRcaller is all green on today's report: https://bioconductor.org/checkResults/3.7/bioc-LATEST/DMRcaller/ Remember that after you update (and push to git.bioconductor.org) you need to wait at least 18h before the update is visible on the build report. 18h is if you pushed right before the builds start (the software builds start every day at 4:45 pm EST). If you push right after the builds start then you will need to wait 42h! Cheers, H. On 04/20/2018 07:47 AM, Radu Zabet wrote:
Hi everyone, I am the maintainer of DMRcaller. I did an update yesterday and on the build report today, the package failed with the error. Error: processing vignette 'DMRcaller.Rnw' failed with diagnostics: methylationProfile needs to be a GRangesList Execution halted On my machine (MacOS with R 3.4.4) it works * creating vignettes ... OK Any suggestion of why this might happen? Is there something I am missing? Radu
-- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Canc <https://maps.google.com/?q=Fred+Hutchinson+Canc&entry=gmail&source=g>er Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpages at fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319
Best regards, Dr Nicolae Radu Zabet Lecturer in Computational Biology, School of Biological Sciences, University of Essex, Colchester, CO4 3SQ, United Kingdom T: +44(0)1206872630 E: nzabet at essex.ac.uk [[alternative HTML version deleted]]