[Bioc-devel] RFC: eSet with two color data

Vincent Carey 525-2265 <stvjc at channing.harvard.edu> writes:

Also (different topic:) do we already have an ontology in place
somewhere for control features (e.g. empty features, features measuring
a known spike-in ratio)?

not to my knowledge.  does MAGE-OM address this?

There's a relevant MGED ontology / controlled vocabulary for use with
MAGE, specifically in the DesignElement package ControlType
association. There's a useful summary in the table here:

http://www.ebi.ac.uk/~ele/ext/submitter.html#ontol

pointing to

http://mged.sourceforge.net/ontologies/MGEDontology.php#ControlType

Martin

Martin Morgan
Bioconductor / Computational Biology
http://bioconductor.org