[Bioc-devel] Install and check error in Windows without any relevant message
To partially answer myself, on looking more carefully, the INSTALL problem seems to happen in the call to curl.exe (i.e., not in the R package installation itself per se). It seems this failed C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/OncoSimulR_2.99.94.tar.gz even if the tar.gz is actually there. Can I assume this is probably a transient error? And if I understand correctly the CHECK error ("Installation failed. See 'D:/biocbuild/bbs-3.13-bioc/meat/OncoSimulR.Rcheck/00install.out' for details") it can also be traced to a curl problem? Best,
On Tue, 11-May-2021, at 20:15:24, Ramon Diaz-Uriarte <rdiaz02 at gmail.com> wrote:
Dear All, I package I maintain (OncoSimulR), which has not experienced any changes in the last week, has failed Install and Check (but not Build or Build bin) on Windows (https://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/riesling1-install.html https://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/riesling1-checksrc.html ). However, I do not know what to do given the error output. For Install the message is curl: (52) Empty reply from server And for Check is just * checking whether package 'OncoSimulR' can be installed ... ERROR Installation failed. See 'D:/biocbuild/bbs-3.13-bioc/meat/OncoSimulR.Rcheck/00install.out' for details. * DONE Status: 1 ERROR See 'D:/biocbuild/bbs-3.13-bioc/meat/OncoSimulR.Rcheck/00check.log' for details. curl: (52) Empty reply from server I do not use curl in the code. Is this a problem fetching dependencies or a problem caused by a package I depend on? Thanks, R.
Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25
Facultad de Medicina
Universidad Aut?noma de Madrid
Arzobispo Morcillo, 4
28029 Madrid
Spain
Phone: +34-91-497-2412
Email: rdiaz02 at gmail.com
ramon.diaz at iib.uam.es
https://ligarto.org/rdiaz