Message-ID: <d6998759-1cf6-26b7-dca2-59c24d63d2e6@roswellpark.org>
Date: 2018-03-27T23:08:42Z
From: Martin Morgan
Subject: [Bioc-devel] vignette problems
In-Reply-To: <ff5728fd-24eb-ede3-97e8-8181f25422e1@mpipz.mpg.de>
When I try and install the version on the master branch of the
Bioconductor git repository I get
STAN master$ Rdev --vanilla CMD INSTALL .
* installing to library ?/home/mtmorgan/R/x86_64-pc-linux-gnu-library
...
** testing if installed package can be loaded
Error: package or namespace load failed for 'STAN' in
namespaceExport(ns, exports):
undefined exports: viterbi2Gviz
This comes about in a rather interesting way because the body of
plotViterbi is not defined
plotViterbi <- function(viterbi, regions, gen, chrom, from, to,
statecols, col)
#'
...
Can you please commit a version of the package that installs?
Martin
On 03/27/2018 06:42 PM, campos wrote:
> Dear bioc-devel team,
>
> I am developing the STAN packages and I am running into problems when
> trying to build my package. The problem is the following:
>
> Error in vignette_type(Outfile) :
> ? Vignette product 'STAN.tex' does not have a known filename extension
> ('NA')
> ERROR: installing vignettes failed
> * removing '/tmp/Rtmp925Iru/Rinst63471ff1efdc/STAN'
> I tried to build the package in old versions (which they used to work)
> and I run in other problems but in this case is:
>
> Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,? :
> ? Running 'texi2dvi' on 'STAN.tex' failed.
> LaTeX errors:
> ! LaTeX Error: File `beramono.sty' not found.
>
> Type X to quit or <RETURN> to proceed,
> or enter new name. (Default extension: sty)
>
> Could you help me with this problem?
>
> Thank you very much,
>
> Rafael
>
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