Message-ID: <CAC2h7uvghS7POJfkTKt3MO27YsGgpyt1tXxQFoOsRAbh+qB-hQ@mail.gmail.com>
Date: 2016-04-09T00:15:57Z
From: Kasper Daniel Hansen
Subject: [Bioc-devel] need advice on how to fix build error in windows
In-Reply-To: <A6B5FDCD-14A8-4934-86BE-8D5DA3E0FE69@fredhutch.org>
Just wait; this is caused by failures upstream of the pd package; partly at
least by affxparser which I maintain (and which was fixed yesterday;
hurray). Hopefully this will get sorted out soon; a lot of people are
trying to work hard to fix this.
Kasper
On Fri, Apr 8, 2016 at 5:36 PM, Dan Tenenbaum <dtenenba at fredhutch.org>
wrote:
> It's fine in today's build report.
> Dan
>
>
> On April 8, 2016 1:31:24 PM PDT, Krithika Bhuvaneshwar <
> kb472 at georgetown.edu> wrote:
> >Dear Biconductor team,
> >
> >We are developers of newly accepted Bioconductor package CINdex. Our
> >package is meant for DNA copy number data analysis, and the example
> >data we use is from Affymetrix SNP 6.0 , so we use
> >'pd.genomewidesnp.6' annotation package for Affymetrix SNP 6.0 in our
> >vignette.
> >
> >Our package built without errors before the Windows tool chain error
> >started. Now the error is "there is no package called
> >'pd.genomewidesnp.6'. Execution halted".
> >
> >We see that package 'pd.genomewidesnp.6' is not present in BioC 3.3
> >devel. So will the 'pd.genomewidesnp.6' from Bio C 3.2 be carried
> >over to the production version ?
> >
> >My question is: how do we go about resolving this error, which is
> >dependent on another package ? Will fixing the windows tool chain fix
> >the problem, in which case we just wait and watch ?
> >
> >We definitely want to have our package in BioC 3.3 release.. So any
> >advice will help
> >
> >Thanks,
> >Krithika
> >
> >_______________________________________________
> >Bioc-devel at r-project.org mailing list
> >https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
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