Message-ID: <55DF431F.7050807@fredhutch.org>
Date: 2015-08-27T17:04:31Z
From: Hervé Pagès
Subject: [Bioc-devel] Trouble installing S4Vectors?
In-Reply-To: <47897_1440681576_55DF0E67_47897_11615_1_CAKxd1KO6igTThSfF74H4-tiDgZ3idMkxio0ebhYTUh8fceeRxg@mail.gmail.com>
Hi Charles,
What compiler do you use? Please show the entire output of
biocLite("S4Vectors") plus your sessionInfo(). Thanks!
H.
On 08/27/2015 06:19 AM, Charles Determan wrote:
> I am trying to run the basic install with biocLite. I am running R 3.2.2
> on Ubuntu 14.04.
>
> I install the BiocInstaller package with
>
> source("http://bioconductor.org/biocLite.R")
>
> I then try again to just install S4Vectors but it errors out on the
> src_utils file with the following error:
>
> str_utils.c: In function ?get_svn_time?:
> str_utils.c:259:2: warning: implicit declaration of function ?tzset?
> [-Wimplicit-function-declaration]
> tzset();
> ^
> str_utils.c:261:18: error: ?timezone? undeclared (first use in this
> function)
> utc_offset = - (timezone / 3600);
> ^
> str_utils.c:261:18: note: each undeclared identifier is reported only once
> for each function it appears in
> make: *** [str_utils.o] Error 1
> ERROR: compilation failed for package ?S4Vectors?
>
> Did I miss something?
>
> Thanks,
> Charles
>
> [[alternative HTML version deleted]]
>
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>
--
Herv? Pag?s
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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