Message-ID: <CAJDQjLejNyunKzWEtZNmsUMEu3v1KGoUep_bDx8EmQw0AY8AUA@mail.gmail.com>
Date: 2026-03-30T23:50:07Z
From: Stephanie Gogarten
Subject: [Bioc-devel] SeqArray build failing due to missing VariantAnnotation
Hi,
SeqArray is failing to build on nebbiolo1, with the error
Quitting from SeqArray.Rmd:293-299 [unnamed-chunk-11]
Error in `seqAsVCF()`:
! Please install VariantAnnotation to use this function
It looks like VariantAnnotation is passing its own builds, so I don't
understand why this error is happening. Is it related to the ordering of
package builds? One potential fix could be to add VariantAnnotation to
VignetteDepends, but it's already in Suggests which implies that it should
be installed prior to building the vignette, right?
thanks,
Stephanie Gogarten
--
Stephanie M. Gogarten, PhD
Senior Research Scientist / Genetic Analysis Center
<https://www.biostat.washington.edu/research/centers/gac>
Department of Biostatistics <https://www.biostat.washington.edu/>
UNIVERSITY OF WASHINGTON
UW Tower Box 359461
4333 Brooklyn Ave NE, Seattle, WA 98195
206.221.0757
sdmorris at uw.edu
she/her/hers
[[alternative HTML version deleted]]