[Bioc-devel] flowCore 1.22.0 broken for some FCS files (which it previously read without errors)
Thanks for the suggestions. Unfortunately FCS is indeed a binary standard, so hacking the files to be "correct" is possible but painful. I'd also ideally like to avoid creating a heavy version-dependency in my analysis, as it would make my work much harder to reproduce in the future.
On 13 June 2012 22:46, Steffen Neumann <sneumann at ipb-halle.de> wrote:
Hi, On Wed, 2012-06-13 at 19:09 -0400, Steve Lianoglou wrote: ...
This isn't your only option -- you don't have to "downgrade" per se.
If you're really in pinch, you can install a previous version of R
*along side* your current install and simply install
biocLite('flowCore') to take a crack at your data.
On a related note: you can even grab the package for your architecture directly from http://bioconductor.org/packages/2.10/bioc/html/flowCore.html and try to install it with R CMD INSTALL. It may or may not work, depending on the dependencies of flowCore. Yours, Steffen -- IPB Halle ? ? ? ? ? ? ? ? ? ?AG Massenspektrometrie & Bioinformatik Dr. Steffen Neumann ? ? ? ? ?http://www.IPB-Halle.DE Weinberg 3 ? ? ? ? ? ? ? ? ? http://msbi.bic-gh.de 06120 Halle ? ? ? ? ? ? ? ? ?Tel. +49 (0) 345 5582 - 1470 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?+49 (0) 345 5582 - 0 sneumann(at)IPB-Halle.DE ? ? Fax. +49 (0) 345 5582 - 1409