Message-ID: <CAMKyGt+NqR0H_PKrbK1c+qunjbk4D=BOxRoq0UOGj03r3wjN-w@mail.gmail.com>
Date: 2012-06-15T23:34:38Z
From: Kieran O'Neill
Subject: [Bioc-devel] flowCore 1.22.0 broken for some FCS files (which it previously read without errors)
In-Reply-To: <assp.05124d7f54.1339652767.8140.16.camel@localhost>
Thanks for the suggestions. Unfortunately FCS is indeed a binary
standard, so hacking the files to be "correct" is possible but
painful.
I'd also ideally like to avoid creating a heavy version-dependency in
my analysis, as it would make my work much harder to reproduce in the
future.
On 13 June 2012 22:46, Steffen Neumann <sneumann at ipb-halle.de> wrote:
> Hi,
>
> On Wed, 2012-06-13 at 19:09 -0400, Steve Lianoglou wrote:
> ...
>> This isn't your only option -- you don't have to "downgrade" per se.
>> If you're really in pinch, you can install a previous version of R
>> *along side* your current install and simply install
>> biocLite('flowCore') to take a crack at your data.
>
> On a related note: you can even grab the package
> for your architecture directly from
> http://bioconductor.org/packages/2.10/bioc/html/flowCore.html
>
> and try to install it with R CMD INSTALL. It may or may not work,
> depending on the dependencies of flowCore.
>
> Yours,
> Steffen
>
> --
> IPB Halle ? ? ? ? ? ? ? ? ? ?AG Massenspektrometrie & Bioinformatik
> Dr. Steffen Neumann ? ? ? ? ?http://www.IPB-Halle.DE
> Weinberg 3 ? ? ? ? ? ? ? ? ? http://msbi.bic-gh.de
> 06120 Halle ? ? ? ? ? ? ? ? ?Tel. +49 (0) 345 5582 - 1470
> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?+49 (0) 345 5582 - 0
> sneumann(at)IPB-Halle.DE ? ? Fax. +49 (0) 345 5582 - 1409
>
>