Hi Kasper,
On 09/19/2010 01:36 PM, Kasper Daniel Hansen wrote:
matchprobes seems to be absent from the devel branch when I use
R-2.12-alpha with biocLite? ?Perhaps this is a fluke because I have
installed it earlier in the year under R-devel (then R-2.12), but it
is also absent from the devel build webpage:
? http://bioconductor.org/checkResults/devel/bioc-LATEST/
Yes matchprobes has been deprecated for a while (more than 2 releases
ago) and now it's gone. Note that at the same time we made it
a deprecated package, we also moved most of its content to Biostrings:
? ?basecontent()
? ?countbases()
? ?complementSeq()
? ?reverseSeq()
? ?revcompDNA()
? ?revcompRNA()
? ?longestConsecutive()
? ?matchprobes()
Most of this stuff is deprecated too. See the individual man pages
for the details.
Cheers,
H.