[Bioc-devel] Package update not showing on Bioc 3.6 webpage

Hi Kushal,

You also need to use the ?SSH? protocol, and not the ?HTTPS? protocol.

Your upstream should be git at git.bioconductor.org:packages/CountClust

Best,

Nitesh

On Nov 1, 2017, at 5:06 PM, Turaga, Nitesh <Nitesh.Turaga at RoswellPark.org>

wrote:

Hi Kushal,

Can you please try,

      ssh -T git at git.bioconductor.org -v


Are you using the correct private key to your corresponding public key

on our machine?

If not, please check the FAQ section bioconductor.org/developers/

how-to/git/faq/ point#15. You can set up a config file to use the correct
private key.

A snippet of your public key on our machine is,

ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAACAQC8EgObkc/

OI4nc8NE0sL4COb6uNaBIURhJoSyisz8i8/KWum0xFhav7ouDpMoZz0lgnlRaIYIR
quJx0R44ojDcsN45TBR8Rna4PNBscVJEsbonD0k3wi2OBySgwxTzL5aZl99H
zuAzthAPzFuskZDHahws9sPUtWMxioI6D5ZktVOb/QJbDJdFHFPXcd8l90wRJN0eGJXX9ex
cJBDU57ufEgDBx9vGv85GTwJjP4UQYLyjDIap2CbrdC+7nJ95fa7YcNUj2znVFcrNnkW9

Best,

Nitesh

On Nov 1, 2017, at 2:23 PM, kushal kumar dey <kshldey at gmail.com> wrote:

Hi Herve,

Thanks for clarifying on the matter. I followed your instructions and

did *git

cherry-pick* to make the following changes

- fix a bug in one of the functions
- add a citation
- fix the readme

I bumped the version number from 1.4.0 to 1.4.1 and tried to push to the
release branch, but I when I run the command,

git push upstream RELEASE_3_6

I meet with the following error

*fatal: remote error: FATAL: W any packages/CountClust nobody DENIED by
fallthru*

*(or you mis-spelled the reponame)*


You can check the branch I want to push on my Github



*https://github.com/kkdey/CountClust/tree/RELEASE_3_6
<https://github.com/kkdey/CountClust/tree/RELEASE_3_6>*


This is my output from *git remote -v *

*origin https://github.com/kkdey/CountClust.git
<https://github.com/kkdey/CountClust.git> (fetch)*

*origin https://github.com/kkdey/CountClust.git
<https://github.com/kkdey/CountClust.git> (push)*

*upstream https://git.bioconductor.org/packages/CountClust
<https://git.bioconductor.org/packages/CountClust> (fetch)*

*upstream https://git.bioconductor.org/packages/CountClust
<https://git.bioconductor.org/packages/CountClust> (push)*


Can you please let me know what I am doing wrong here and how I can

update

the release version?


Thank you so much!


Kushal





On 30 October 2017 at 17:50, Herv? Pag?s <hpages at fredhutch.org> wrote:

Hi Kushal,

If you push changes without bumping the version of your package,
the update won't propagate.

You only bumped the version to 1.5.1 today so you need to wait
about 24 hours before seeing this reflected on the landing page
for CountClust.

Also please note that you did the version bump plus a few other
commits (6 commits in total) in master today **after** we created
the RELEASE_3_6 branch so these changes will only propagate to
BioC 3.7 (the new devel version of BioC, starting tomorrow).
If you want these changes to also propagate to the BioC 3.6 release
you'll need to push them to the RELEASE_3_6 branch. This is
typically done with 'git cherry-pick' as documented here:


https://bioconductor.org/developers/how-to/git/bug-fix-in-
release-and-devel/

Cheers,
H.


On 10/30/2017 02:41 PM, kushal kumar dey wrote:

Hi all,

I am the author and maintainer of the CountClust package. I recently
submitted an update (version 1.5.1) to the package through
Bioconductor Git  and I can access this updated version when I clone

the

source repository

git clone https://urldefense.proofpoint.

com/v2/url?u=https-3A__git.bio

conductor.org_packages_CountClust&d=DwICAg&c=eRAMFD45gAfqt84
VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-x3S
8Sl0fsASITg_-ULMYIykoPk6Y0PqK2NoRjC43iA&s=YBM0DldFbCkrEBnHaB
n5X8-jb1yhm_GmSUWL6SIGLmo&e=

However, the updated version is not available in the official

Bioconductor

3.6 page, which still shows the version 1.3.0.

https://urldefense.proofpoint.com/v2/url?u=https-3A__www.bio
conductor.org_packages_3.6_bioc_html_CountClust.html&d=DwICA
g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvS
XAJJKaaPhzWA&m=-x3S8Sl0fsASITg_-ULMYIykoPk6Y0PqK2NoRjC43iA&
s=UfPX4T5l4JBfXBumCcQ-5YOm59i_xfX2OEILrQ3I2u0&e=

Can you please let me know if the page has not been updated for the
packages yet or if I would need to do something at my end to update

the

version reported on the page?

Thanks so much

--
Herv? Pag?s

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Ce
<https://maps.google.com/?q=n+Cancer+Research+Ce&entry=gmail&source=g

nter

1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages at fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319

--
Kushal K. Dey
Graduate Student
5 th Year, Department of Statistics
University of Chicago
Contact: +1 312-709-0680 | kkdey at uchicago.edu

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