Hi,
I have a simple issue with rtracklayer::import.bw() which I believe
can be fixed by a one line edit to the NAMESPACE file.
The error is that url.exists() can't be found, which is part of RCurl.
library(rtracklayer)
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ?BiocGenerics?
The following objects are masked from ?package:parallel?:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ?package:stats?:
IQR, mad, xtabs
The following objects are masked from ?package:base?:
anyDuplicated, append, as.data.frame, cbind, colnames, do.call,
duplicated, eval, evalq, Filter, Find, get, grep, grepl,
intersect, is.unsorted, lapply, lengths, Map, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, Position,
rank, rbind, Reduce, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Loading required package: S4Vectors
Attaching package: ?S4Vectors?
The following objects are masked from ?package:base?:
colMeans, colSums, expand.grid, rowMeans, rowSums
Loading required package: IRanges
Loading required package: GenomeInfoDb
Warning messages:
1: package ?rtracklayer? was built under R version 3.3.1
2: package ?GenomicRanges? was built under R version 3.3.1
3: package ?BiocGenerics? was built under R version 3.3.1
4: package ?S4Vectors? was built under R version 3.3.1