[Bioc-devel] R: developing a bioconductor package with TDD (RUnit)
On 01/18/2013 08:26 AM, Davide Rambaldi wrote:
Hello, I am trying to follow the bioconductor RUnit guidelines (http://www.bioconductor.org/developers/unitTesting-guidelines/#duringDevelopment) I have followed the the minimal setup so I have: Suggests: RUnit, BiocGenerics in DESCRIPTION BiocGenerics:::testPackage("MyPackage") in MyPackage/tests/runTests.R and some test_XXX.R files in MyPackage/inst/unitTests/ If I run a single test files with: library(RUnit) source("LIBRARY FILES") source("MyPackage/inst/unitTests/test_getKeywordValue.R") test_getKeywordValue()
To me this looks ok. Are you using R-devel and current packages (output of
sessionInfo())? After installing your package, does
R --vanilla -e " BiocGenerics:::testPackage('MyPackage')"
do the right thing? After running R CMD check, are there any hints in the file
MyPackage.Rcheck/tests/runTests.Rout
?
The test run (and fails when need to fail), but if I run R CMD check MyPackage The command say: * checking tests ... Running ?runTests.R? OK But don't run my tests in MyPackage/inst/unitTests directory... What I missing? Platform: x86_64-apple-darwin9.8.0 R version 2.15.2 (2012-10-26) Best Regards and thanks in Advance ----------------------------------------------------------- PLEASE NOTE MY NEW EMAIL ADDRESS ----------------------------------------------------------- ----------------------------------------------------- Davide Rambaldi, PhD. ----------------------------------------------------- IEO ~ MolMed [e] davide.rambaldi at ieo.eu [e] davide.rambaldi at gmail.com
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