Message-ID: <520579F2.1000001@fhcrc.org>
Date: 2013-08-09T23:23:30Z
From: Marc Carlson
Subject: [Bioc-devel] GenomicFeatures LoadDb Path
In-Reply-To: <A4D0AD48C137224D9E532742F418928A1CFC324B@BL2PRD0111MB520.prod.exchangelabs.com>
On 08/08/2013 07:00 PM, Dario Strbenac wrote:
> It's not documented by ?loadDb, but providing an absolute path doesn't work, and shows an unusual error message.
>
>> genes17 <- loadDb("/nb/dario/genes/gencode17.db")
> Error in loadDb(file, dbType, dbPackage, ...) :
> error in evaluating the argument 'dbType' in selecting a method for function 'loadDb': Error: argument "dbType" is missing, with no default # Help file says this is optional.
>> genes17 <- loadDb("gencode17.db")
>>
Hi Dario,
I can't reproduce this problem.
Can you please give me your sessionInfo()?
Marc
> AnnotationDbi_1.22.6
>
> --------------------------------------
> Dario Strbenac
> PhD Student
> University of Sydney
> Camperdown NSW 2050
> Australia
>
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