Hi,
I have a problem while generating a html vignette (html_document) with
BiocStyle version 2.5.39 from the development branch. I have attached a
small example markdown that replicates the problem on my machine.
I want to add an image as a figure and I would like the caption to say
Figure X whereas X is the correctly numbered Figure in the document.
Unfortunately, no BiocStyle figure caption is created and no number
provided.
I am really grateful for your help.
Regards,
Stefan
Below is the output of sessioninfo:
R version 3.4.1 (2017-06-30)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Sierra 10.12.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/
A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/
Resources/lib/libRlapack.dylib
locale:
[1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
other attached packages:
[1] Numero_0.99.0 BiocInstaller_1.27.5
loaded via a namespace (and not attached):
[1] Rcpp_0.12.13 compiler_3.4.1 bitops_1.0-6
[4] tools_3.4.1 digest_0.6.12 jsonlite_1.5
[7] evaluate_0.10.1 memoise_1.1.0 graph_1.55.0
[10] rstudioapi_0.7 commonmark_1.4 BiocCheck_1.13.2
[13] yaml_2.1.14 curl_2.8.1 parallel_3.4.1
[16] withr_2.0.0 httr_1.3.1 stringr_1.2.0
[19] knitr_1.17 roxygen2_6.0.1 xml2_1.1.1
[22] desc_1.1.1 devtools_1.13.3 stats4_3.4.1
[25] rprojroot_1.2 getopt_1.20.0 optparse_1.4.4
[28] Biobase_2.37.2 R6_2.2.2 XML_3.98-1.9
[31] RBGL_1.53.0 rmarkdown_1.6 magrittr_1.5
[34] htmltools_0.3.6 backports_1.1.1 codetools_0.2-15
[37] biocViews_1.45.0 BiocGenerics_0.23.2 RUnit_0.4.31
[40] assertthat_0.2.0 BiocStyle_2.5.39 stringi_1.1.5
[43] RCurl_1.95-4.8 crayon_1.3.4