[Bioc-devel] I: EXTERNAL: R: release of new version of package
Dears I'm sorry to bother you with this again, I followed you suggestions to up-to-date the changes of my package (https://github.com/Manuelaio/uncoverappLib) pushing them on master branch. I?m looking on https://bioconductor.org/checkResults/3.14/bioc-LATEST/uncoverappLib/ and the last hash commit doesn't correspond with the most recent commit in my repo. On my Github, the last commit is form 5 days ago meanwhile on Bioconductor link it is from Tue, 26 Oct 2021. Now, when I try to do git push upstream master I receive Everything up-to-date I believe that I don?t? have got corr?ectly UpToDate Bioconductor git, as you can see on attached screenshot of my repo. Is there any way to check this? Emanuela Emanuela Iovino PhD Student in Data Science and Computation Division of Medical Genetics Dept. Medical and Surgical Sciences - DIMEC University of Bologna Pol.S.Orsola-Malpighi, via Massarenti 9,
Da: Bioc-devel <bioc-devel-bounces at r-project.org> per conto di Marcel Ramos <sperez at roswellpmarcel.ramoark.org>
Inviato: luned? 20 dicembre 2021 20:02
A: bioc-devel at r-project.org <bioc-devel at r-project.org>
Oggetto: Re: [Bioc-devel] EXTERNAL: R: release of new version of package
Hi Emanuela,
You should not be pushing new features to the RELEASE_3_14 branch.
This is meant to be stable throughout the course of the release cycle.
Make sure you are pushing your new commits to the devel branch of
Bioconductor with:
git push upstream master
Based on your git history, it looks like you were able to make changes.
Do not forget to bump the Z version of your package, e.g.,
1.5.1
in devel so that the new version of the package propagates. This can
take between 24 - 48 hours.
Best regards,
Marcel
On 12/20/21 1:43 PM, Emanuela Iovino wrote:
> Dear Nitesh
> thank you for your answer.
> I followed Bioconductor instruction but when I pushed on
>
> upstream/RELEASE_3_14 I received always Everything up-to-date.
>
> Before to follow Bioconductor instruction I already had pushed all my modification on my Github repository and I don't know if it got me a problem in next steps.
>
> I checked the last commit onhttp://bioconductor.org/checkResults/release/bioc-LATEST/uncoverappLib/ and it doesn't match with my last modification.
>
> Have I to repeat all steps?
>
> Thanks
>
> Emanuela
>
>
>
> ________________________________
> Da: Nitesh Turaga<nturaga.bioc at gmail.com>
> Inviato: luned? 20 dicembre 2021 15:36
> A: Emanuela Iovino<emanuela.iovino at unibo.it>
> Cc:bioc-devel at r-project.org <bioc-devel at r-project.org>
> Oggetto: Re: [Bioc-devel] release of new version of package
>
> Hi,
>
> You?ll want these two tutorials since I?m guessing you have a Github Repo and along with the git.bioconductor repo.
>
> So you?ll first have to sync (1), then push your updates to both Github and Bioc server(2)
>
> (1)http://bioconductor.org/developers/how-to/git/sync-existing-repositories/
>
> (2)https://bioconductor.org/developers/how-to/git/push-to-github-bioc/
>
> Best
>
> Nitesh Turaga
> Scientist II, Department of Data Science,
> Bioconductor Core Team Member
> Dana Farber Cancer Institute
>
>> On Dec 20, 2021, at 9:32 AM, Emanuela Iovino<emanuela.iovino at unibo.it> wrote:
>>
>> Hello everyone
>> I'm the developer and the maintainer of Bioconductor package uncoverappLib .
>> I recently added some features to package and I would like to know how update to Biocondunctor . Do I follow new package workflow ? (https://bioconductor.org/developers/how-to/git/new-package-workflow/).
>> Many thanks in advance
>>
>> Emanuela Iovino
>> PhD Student in Data Science and Computation
>> Division of Medical Genetics
>> Dept. Medical and Surgical Sciences - DIMEC
>> University of Bologna
>> Pol.S.Orsola-Malpighi, via Massarenti 9,
>>
>>
>> [[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
> [[alternative HTML version deleted]]
>
>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
---
Marcel Ramos
Bioconductor Core Team
Roswell Park Comprehensive Cancer Center
Dept. of Biostatistics & Bioinformatics
Elm St. & Carlton St.
Buffalo, New York 14263
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