[Bioc-devel] Error in BUILD report (anamiR)
Hi Ti-Tai, Not much you or we can do about this. Hopefully the RMySQL Windows binary (currently 0.10.11) will soon be fixed on CRAN. Thanks for keeping an eye on the build results for anamiR. Best, H.
On 05/04/2017 08:28 AM, ??? wrote:
Hi all, It turns out that this error is related to the RMySQL package(CRAN), and only happened in windows operating system. https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_rstats-2Ddb_RMySQL_issues_190&d=DwIGog&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=VSEps9beT-guh1-ZsGnrNtM76EXvC0sLDGAvbHiyf7o&s=EttA79WmCSlSiTmcSwggrVyANbs5AysI8hyEOfn4MeI&e= It looks like it can be solved only if we downgraded the RMySQL version now. Can I choose not to import the newest RMySQL version while being tested in the BUILDREPORT? Ti-Tai
________________________________________ ?: Obenchain, Valerie [Valerie.Obenchain at RoswellPark.org] ????: 2017?4?16? ?? 10:58 ?: ???; bioc-devel at r-project.org ??: Re: [Bioc-devel] Error in BUILD report (anamiR) It looks like this has been resolved on today's report: https://urldefense.proofpoint.com/v2/url?u=http-3A__www.bioconductor.org_checkResults_devel_bioc-2DLATEST_&d=DwIGog&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=VSEps9beT-guh1-ZsGnrNtM76EXvC0sLDGAvbHiyf7o&s=YqN2fHnUtseqzRMY6V06EubUXBY_m568PYWkUh0Zhb8&e= Valerie On 04/07/2017 02:21 PM, ??? wrote: Hi all, I got en error when it tries to create vignette in BUILD: tokay2 Windows Server 2012 R2 Standard / x64 Error: processing vignette 'IntroductionToanamiR.Rmd' failed with diagnostics: could not run statement: Lost connection to MySQL server during query But for Linux or Mac, it all works. I have no idea how to solve this problem. Many thanks, Ti-Tai [[alternative HTML version deleted]] _______________________________________________ Bioc-devel at r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIGog&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=VSEps9beT-guh1-ZsGnrNtM76EXvC0sLDGAvbHiyf7o&s=qn1gkdYoqG_1sfJjLb27oOtHp3x8K4Brjgt_SaWXkIE&e= This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel at r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwIGog&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=VSEps9beT-guh1-ZsGnrNtM76EXvC0sLDGAvbHiyf7o&s=qn1gkdYoqG_1sfJjLb27oOtHp3x8K4Brjgt_SaWXkIE&e=
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