Message-ID: <CAANT7+WhQXEU8fgyEMdKo7GfoJ9N+Wvrik+s+CV_9chJVjaKRA@mail.gmail.com>
Date: 2024-02-27T12:21:38Z
From: Vincent Carey
Subject: [Bioc-devel] Question about cstack usage error
In-Reply-To: <89e4f917-207f-46d2-a6d1-a9e9621e7291@meduniwien.ac.at>
can you build a reprex for gplots? we are stretched very thin right now
and i am
sorry to say i don't see this as actionable in our group.
On Tue, Feb 27, 2024 at 2:36?AM Johannes Griss <
johannes.griss at meduniwien.ac.at> wrote:
> Hi,
>
> We've been encountering a cstack related error on the build systems on
> random occasions
> (
> https://master.bioconductor.org/checkResults/3.18/bioc-LATEST/ReactomeGSA/nebbiolo2-checksrc.html
> ):
>
> Error: C stack usage 7970308 is too close to the limit
>
> I know, that the limit can be adapted using the "ulimit -s 16384"
> command before starting the R session.
>
> Unfortunately, in our case it seems to be caused by a call to the
> gplots::heatmap.2 function.
>
> Thanks a lot!
>
> Kind regards,
> Johannes
>
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